Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa2g04645 | ATGTCTAACCATGACGAAGAGAGAAACCACGAGCTCCATCCATTCACGACACCACAATTGCAATTAAACACATCAAACACTAATACCACCACACAAAACCACCATCCCACACCATCCTCCACCATCGCTCGCCGCCCACGGGGGCGTCCCCCTGGCTCCAAGAACAAGCCTAAAATTCCTGCCATGGTAACACATGACATTCCTAATGCACTAACTTCTCATGCTCTTGAGATCACAACTGGTGCCGATGTTTTAAAGAGTCTCTTTGATTACACTCGTCGTAAAGGGAAGGGTATCTACATCCTTGGTGGAAATGGAGTGGTGAGGTATATAAGGCTACGTCAACCAACGGGGAAAGTTTTAACTCTCAAGGGAAGGATACAAATTCATTCAATATCTGGTATGATTTTCTCGCCCCCAACATCAAGGGCTGCTGGAGGATTGACAGTTTACTTATCAGGACCAAAGGGACATATGATTGGGGGGAGCGTGATGTCCCCTATGGTGGCGTCAAATTCAATAACTTTGATGGCTTTTTCTTTTGCAAACATCACATATGAAAAAATTTCTTCGGTGGCATAA | 582 | 0.4502 | MSNHDEERNHELHPFTTPQLQLNTSNTNTTTQNHHPTPSSTIARRPRGRPPGSKNKPKIPAMVTHDIPNALTSHALEITTGADVLKSLFDYTRRKGKGIYILGGNGVVRYIRLRQPTGKVLTLKGRIQIHSISGMIFSPPTSRAAGGLTVYLSGPKGHMIGGSVMSPMVASNSITLMAFSFANITYEKISSVA | 193 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa2g04645 | 193 | ProSiteProfiles | PPC domain profile profile. | 68 | 193 | IPR005175 | - | |
| Vifa2g04645 | 193 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 73 | 182 | IPR005175 | - | |
| Vifa2g04645 | 193 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 24 | 189 | IPR014476 | GO:0003680 | |
| Vifa2g04645 | 193 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 69 | 189 | - | - | |
| Vifa2g04645 | 193 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
| Vifa2g04645 | 193 | Gene3D | - | 72 | 191 | - | - | |
| Vifa2g04645 | 193 | MobiDBLite | consensus disorder prediction | 14 | 40 | - | - | |
| Vifa2g04645 | 193 | CDD | DUF296 | 72 | 171 | IPR005175 | - | |
| Vifa2g04645 | 193 | PIRSF | ESCAROLA | 1 | 191 | IPR014476 | GO:0003680 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa2g04645 | Vifa-Chr2 | 1370115520 | 1370116101 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa2g04645 | 36 | 189 | AT-hook Motif Nuclear Localized (AHL) Family | AT1G76500 | 48.485 | 1.36e-47 | 155 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa2g04645 | - | - | psat:127078493 | 284.263 |