Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04643 ATGGAGGGTGGTGAGAGAGTTCGAGACGATATGGATCTCGTTCATTCGGAAAATGCTGCTGTTGGTGCCGTTGGTGCTGTTGGTGGTTCGCTTTCTCGGGATCAAGAAATGGTTGATCAAGGTGATGCTGATGCAGCAATTACAAATGTCCATTCTACCCCTGCTACTCAGGCTAAAGTTAAGAATGTGACTGAAATGAATAATCATAGTGTGATAAACAGTGCTAGTGAGATGAGTGGTTATGATGAGACTGGTACTGCTATGGAACGAGAAGCGTTTATGAAAGAGCTTGAGAGTTTTTACAGATCGAGGTCGTTGGAGTTTAAGCCTCCTAAGTTTTACGGAGTGCCATTGAATTTGGTCAAGTTATGGAGAGCTGTTATCAAACTGGGTGGCTATGAATTGGTAACTGGATCGAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCCACCCTCCTAAGACTTGCACTACAGTCTCATGGACGTTTAGAATCTTTTATGAGAAGGCGCTTTTAGAGTATGAAAAGCATAAGAGAGAGACCGGGGAGCTGCAGCTCCCTGTTGGTACCCTCCATCAACCTTCAAGTGTGGAAAAAGAGACCATTGTTTATCAGGCTCCAGGCTCAGGTAGGGCACGTAGGGATGCAGCAGCACGCGCAATGCAAGGTTGGCATGCTCAGCGCCTTCTTGGATACGGTGAGGTTGCTGAGTCAGCTATTAAGGACAAGAACTTCAGTCCCACGCCAAAACGCGAAAAGAACCTCAAAAGTATTGGTGTGATCAACAAACAGAGGACACCATCTGGTATGGACCATGCTGACAAAGCTGCAAATATAGATGGAGACAGGCAATTGGTCACTGCAGTAGTGGACATTGGACCCCCAGCTGACTGGGTCAAGATCAATGTGCGGGAAACGAAGGATTGTTTTGAAGTGTATGCACTGGTTCCTGGGCTCCTTCGCGAGGAGGTGCGAGTTCAATCCGATCCAGTTGGACGACTTGTTATAACTGGTACGCCTGAACATGTTGATAATCCATGGGGTATCACCCCCTTCAAAAAGGTTGTGAACTTACCTGCAAGAATCGATCCACTTCAGACATCTGCTATTGTTAGTTTGCATGGTCGACTATTTGTACGCGTTCCTTTTGAGCAGGGAGCTGTATGA 1164 0.4665 MEGGERVRDDMDLVHSENAAVGAVGAVGGSLSRDQEMVDQGDADAAITNVHSTPATQAKVKNVTEMNNHSVINSASEMSGYDETGTAMEREAFMKELESFYRSRSLEFKPPKFYGVPLNLVKLWRAVIKLGGYELVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRETGELQLPVGTLHQPSSVEKETIVYQAPGSGRARRDAAARAMQGWHAQRLLGYGEVAESAIKDKNFSPTPKREKNLKSIGVINKQRTPSGMDHADKAANIDGDRQLVTAVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGTPEHVDNPWGITPFKKVVNLPARIDPLQTSAIVSLHGRLFVRVPFEQGAV 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04643 387 CDD ARID 89 174 - -
Vifa2g04643 387 SMART bright_3 88 179 IPR001606 GO:0003677
Vifa2g04643 387 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 286 387 IPR002068 -
Vifa2g04643 387 FunFam AT-rich interactive domain-containing protein 3 87 186 - -
Vifa2g04643 387 Gene3D - 286 386 IPR008978 -
Vifa2g04643 387 FunFam AT-rich interactive domain-containing protein 3 278 386 - -
Vifa2g04643 387 SUPERFAMILY HSP20-like chaperones 295 382 IPR008978 -
Vifa2g04643 387 Pfam ARID/BRIGHT DNA binding domain 89 174 IPR001606 GO:0003677
Vifa2g04643 387 Pfam Hsp20/alpha crystallin family 302 383 IPR002068 -
Vifa2g04643 387 SMART ARID_2 84 174 - -
Vifa2g04643 387 Gene3D - 87 186 IPR036431 GO:0003677
Vifa2g04643 387 SUPERFAMILY ARID-like 83 183 IPR036431 GO:0003677
Vifa2g04643 387 ProSiteProfiles ARID domain profile. 87 178 IPR001606 GO:0003677
Vifa2g04643 387 CDD ACD_sHsps_p23-like 302 381 - -
Vifa2g04643 387 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 42 384 IPR045147 GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04643 Vifa-Chr2 1369799681 1369805318 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04643 74 384 ARID Transcription Factor Family AT1G76510 70.833 9.85e-151 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa2g04643 ARID 4.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04643 - - psat:127088333 711.835