Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04639 ATGTCTAGTGCAAACATTACTCACATCATTGAGATCGGTGTTGGAGTCGATTTGGTAGATGCTCTCTTTGAATTAGCTCGACGTCGAAGGAGATCTATTCGAGTCCTTAATGGAAGAGGAGTGATTGAGCAAGTCACGCTCCGTCAACCCACAGGGAGAATCGTAACCCTTCAAGGAAGTTTCAATATCATCTCAATGGCTGGGACAATTCTCCCATCATCGACGTTGGAGAGTGCACAAGAACTGGACGTTTATTTATCAAGCTCTTCATATGAGGTGATTGGAGGGAGTGTGGTGTCCCCTCTTGTGGCTTCACATCCATTGGTATTGACTGTTGTCTTATACTCAGACAATGCTTTTTAA 363 0.4408 MSSANITHIIEIGVGVDLVDALFELARRRRRSIRVLNGRGVIEQVTLRQPTGRIVTLQGSFNIISMAGTILPSSTLESAQELDVYLSSSSYEVIGGSVVSPLVASHPLVLTVVLYSDNAF 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04639 120 Gene3D - 7 120 - -
Vifa2g04639 120 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 119 IPR014476 GO:0003680
Vifa2g04639 120 CDD DUF296 7 105 IPR005175 -
Vifa2g04639 120 SUPERFAMILY AF0104/ALDC/Ptd012-like 7 117 - -
Vifa2g04639 120 ProSiteProfiles PPC domain profile profile. 2 120 IPR005175 -
Vifa2g04639 120 Pfam Plants and Prokaryotes Conserved (PCC) domain 7 113 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04639 Vifa-Chr2 1368634269 1368634631 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04639 3 120 AT-hook Motif Nuclear Localized (AHL) Family AT3G60870 41.667 1.07e-24 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04639 - - tpra:123911212 103.219