Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04638 ATGGCGTATCAGGGTCCGAGTTCGGGATCGAGTTCGAGTTCGGGGTTTCAATTGGTGAATTCTCCGTTTGGAGATACGACTTATACTAAGGTGTTTGTTGGGGGATTGGCGTGGGAGACGCAGAGCGAGACTATGCGGCGTTACTTTGATCAATTTGGGGAAATTCTTGAAGCCGTTGTTATTACTGATAAGAATACAGGACGATCTAAAGGCTATGGTTTTGTGACTTTCCGTGATCCAGAAGCTGCTAGGAGAGCCTGTGCTGATCCAAGTCCTGTTATTGATGGTAGACGAGCTAATTGTAATTTGGCTTCGCTGGGTCGTCCACGGCCTCCTATCCCCTATGGACGGGTAAGACCAGCATCCCCTTATGTTGGAAGTTTGCAACCAGCCCGTGGTGCTTATGTTGGAAGTTATGGCTACCAACAACCACTTTCCTATGGCTATCAACAAGGAGGAATGGTTTATCCTCCTTATGGGTATACGGCATATGGACCTGAGTACGTCTACCCACAGAGTATGTACAACCCTTATGCGGGCCAACAATACCTTCAGATATATGGCGTGCCGGGTGGGATGAATACAGCCATTTATCCTTATGGACAATTGGGTCAAGCTATTCCTGGTGGTCATGGTTATACAGCAATGCAGGGTTATACAGTACCCGGTCATCAGATTGTTCCATATGGTGGATCCAATGTTAATGCAATGACAACTTCACCTATGCCTGCCATTCAAGCCTCGTATCCTAGCGGAATTGGTGCACCCGTTCCAGGCCAACAATTTATTGTTTCTCCTCAGTTCATACAAGGTAGCGGTCCTGACCAAACAACTGGTTGA 840 0.4726 MAYQGPSSGSSSSSGFQLVNSPFGDTTYTKVFVGGLAWETQSETMRRYFDQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPSPVIDGRRANCNLASLGRPRPPIPYGRVRPASPYVGSLQPARGAYVGSYGYQQPLSYGYQQGGMVYPPYGYTAYGPEYVYPQSMYNPYAGQQYLQIYGVPGGMNTAIYPYGQLGQAIPGGHGYTAMQGYTVPGHQIVPYGGSNVNAMTTSPMPAIQASYPSGIGAPVPGQQFIVSPQFIQGSGPDQTTG 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04638 279 PANTHER BOULE-RELATED 7 248 - -
Vifa2g04638 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 106 IPR000504 GO:0003723
Vifa2g04638 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 87 IPR000504 GO:0003723
Vifa2g04638 279 CDD RRM_RBM24_RBM38_like 29 104 - -
Vifa2g04638 279 Gene3D - 4 116 IPR012677 -
Vifa2g04638 279 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 23 110 - -
Vifa2g04638 279 SMART rrm1_1 30 102 IPR000504 GO:0003723
Vifa2g04638 279 SUPERFAMILY RNA-binding domain, RBD 28 116 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04638 Vifa-Chr2 1368561638 1368564791 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04638 1 184 C2H2 Transcription Factor Family AT2G19380 30.256 5.19e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04638 - - gmx:100782606 511.916