Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04637 ATGAGAGCATTGTTGTTGTTGGCTTTTATCGTGAAGGAGAAAACATTCTTATTTACAAAGTTCTTATGCTTTTTACATGTTACCGACAACTATCTGGTTGACCCTGTTAAGATATATGGTCCCAACATGCTTCCTGTAATCGATTTGAATCCAAGCATATTTCTTGCTGAAAGGATAACACCTCGATCTGTTAAAATTACTCACAAAGATATTGTAGTCTTCCGCTCACCTAAAAACCCTAGAAGGACTGTGCAGGGTGATAACAAATATAATAGCATTGATTCTAGACATTTTGTTCCAATTCCTTATGGCCTTATTGAGAGTAAGATATTTTGGAAGGTATTTCCACTTGATGATTTTGGATCGTTCTGGAGAAAATGA 381 0.357 MRALLLLAFIVKEKTFLFTKFLCFLHVTDNYLVDPVKIYGPNMLPVIDLNPSIFLAERITPRSVKITHKDIVVFRSPKNPRRTVQGDNKYNSIDSRHFVPIPYGLIESKIFWKVFPLDDFGSFWRK 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04637 126 CDD S26_SPase_I 35 110 IPR019533 GO:0004252|GO:0006465
Vifa2g04637 126 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 14 84 - -
Vifa2g04637 126 SUPERFAMILY LexA/Signal peptidase 31 124 IPR036286 -
Vifa2g04637 126 Gene3D Umud Fragment, subunit A 81 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04637 Vifa-Chr2 1368270651 1368271144 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04637 43 121 MADS-box Gene Family AT1G29960 34.783 2.47e-17 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04637 K09647 - gmx:100805997 115.931