Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04634 ATGAAAACCACTAAAATCATGTCGAGATCTGGATTGGGGAATGAGTACGAGTTCCCTCCCGGATTTGACAAACTTTATGAAACACCACAACAACCACACTTACTGGGTTCACAAAGTAACTTTCCTCTTAATCATTCTTCTCTTTTTTCTGGACATTTAAATTATCTACCTGAAATTATTAGCTATTCTGATGTGCCATTTTTTTCAACGGCTACTTTGCCTTCCACCTCAACCAACACCTCTAAGAAGCGTAGAGGTCGACCTTACGGATCTCGCAACAAAAAGTCATATATGAATATCGTTTATGGAATGGATATATCTTCACTTAAGTCTCACATGATCATCGTGAATATCAAAGAGAATGTTTTGGAGAAGATTATAGCCTTTTCTCATAGTCTCTCAAAAAATGTAACCATTATATCATCAAATGGGACCATTTCTAAGATAAGGTTTTCTCACTCTCCATCGTCTAATGAAACTGTGACCTATGAGGGACTATTTGAGATCCTATCACTGAAAGGTTCTGTGTCTGTTAGCACAAATAAAAGTGAACAAAAAAGATATGATGGAGTAAAGGGGTCCTTTGCTTCATTATCAAATGGTCGTTCATTTGGTAGTAAAATTGACGGTGTTCTGATTGCTGCCTCTCCAGTTCAGATAATACTATGGAGCTTTTTTTCGGAGGGTCAAGAAGTAGTATTGTCCGACTCAAATGAGCCTCCTACAGAAGGCCCAAGCAAGCCCCCATCCGCGATTCTTTCACCGGCAGGAATATTGATATCCTAG 786 0.388 MKTTKIMSRSGLGNEYEFPPGFDKLYETPQQPHLLGSQSNFPLNHSSLFSGHLNYLPEIISYSDVPFFSTATLPSTSTNTSKKRRGRPYGSRNKKSYMNIVYGMDISSLKSHMIIVNIKENVLEKIIAFSHSLSKNVTIISSNGTISKIRFSHSPSSNETVTYEGLFEILSLKGSVSVSTNKSEQKRYDGVKGSFASLSNGRSFGSKIDGVLIAASPVQIILWSFFSEGQEVVLSDSNEPPTEGPSKPPSAILSPAGILIS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04634 261 SUPERFAMILY AF0104/ALDC/Ptd012-like 104 228 - -
Vifa2g04634 261 Pfam Plants and Prokaryotes Conserved (PCC) domain 111 225 IPR005175 -
Vifa2g04634 261 ProSiteProfiles PPC domain profile profile. 106 247 IPR005175 -
Vifa2g04634 261 CDD DUF296 110 225 IPR005175 -
Vifa2g04634 261 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 66 243 IPR039605 GO:0003680
Vifa2g04634 261 Gene3D - 110 237 - -
Vifa2g04634 261 MobiDBLite consensus disorder prediction 234 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04634 Vifa-Chr2 1366534293 1366536672 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04634 65 231 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 38.323 1.40e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04634 - - psat:127084195 360.918