Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04633 ATGATCATCGTGAATAACGAAGAGAATGTTTTGGAGAAGATTATAGCCTTTTCTCATAGTCTCTCAAAAAATGTAACTATTATATCATCAAATGGGACGGTTTCTAAAATAAAGTTTTCTCAATCTCCATCATCTTCTGAAACTGTGACCTATGAGGGACTATTTGAGATCCTATCACTGAAAGGTTCTCTGTCTGTTAACACAAATAAAAGTGAACAAAAAAGATATGATGGAGTAAAAGGGTCCTTTGCTTCATTATCAAATGGTCGTTCATTTGGTGGTAAAATTGACGGTATTCTGATTGCTGCCTCTCCAGTTCAGATAATACTAGGGAGCTTTTTTACGGAGGGTCAAGAAGTAGTATTGTCCGACCCAAATGAGCCTCCTACAGAAGGCCCAAGCAAGCCCTCATCCGCGATTCTTTCATCGGAAGGAATATTGATATCCTAG 450 0.3822 MIIVNNEENVLEKIIAFSHSLSKNVTIISSNGTVSKIKFSQSPSSSETVTYEGLFEILSLKGSLSVNTNKSEQKRYDGVKGSFASLSNGRSFGGKIDGILIAASPVQIILGSFFTEGQEVVLSDPNEPPTEGPSKPSSAILSSEGILIS 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04633 149 ProSiteProfiles PPC domain profile profile. 1 135 IPR005175 -
Vifa2g04633 149 Gene3D - 1 124 - -
Vifa2g04633 149 MobiDBLite consensus disorder prediction 124 149 - -
Vifa2g04633 149 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 131 IPR039605 GO:0003680
Vifa2g04633 149 CDD DUF296 2 113 IPR005175 -
Vifa2g04633 149 MobiDBLite consensus disorder prediction 133 149 - -
Vifa2g04633 149 Pfam Plants and Prokaryotes Conserved (PCC) domain 2 113 IPR005175 -
Vifa2g04633 149 SUPERFAMILY AF0104/ALDC/Ptd012-like 2 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04633 Vifa-Chr2 1366464816 1366466371 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04633 8 119 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 44.643 1.48e-25 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04633 - - psat:127084195 209.149