Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04631 ATGATGTTAGCAATGGAAGAAGTACTGTGTGAACTTAGTGATCATGAAAAGAAAAACCAGCAAGGTCTTCCACCTGGTTTCAGGTTTCACCCTACTGATGAAGAACTCATTACCTTCTATTTAGCTTCCAAAGTTTTCAAAAACACTTTTTTCAATAATGTCAAGTTTGCTGAAGTTGATCTCAACAGATGTGAGCCATGGGAACTTCCAGATATGGCAAAGATGGGAGAAAGAGAGTGGTATTTGTTCAGTTTGCGAGACAGAAAATACCCAACTGGTCTTAGAACAAATAGAGCAACTGGAGCTGGTTACTGGAAAGCCACTGGGAAAGACAAAGATGTTTACAGCAACAACAGAACTAGAGCTTTACTTGGCATGAAGAAGACTCTTGTTTTCTACAAAGGAAGGGCCCCTCGTGGTGAAAAGACCAAATGGGTCATGCATGAGTATCGCTTACACACTCATTTTTCACCTTCAACTTGTAAGGAAGAGTGGGTGATATGCAGGATATTTCATAAATCAGTGGAAAAAAGAAGTTCACTATTACTTCAAGTTCAAGGACATTTAGGTGCTAATAATAATAATAATTCTAATTTAACCCCCCAAAAAAGCTGTTTACCTCTTCATCCTCCTTCTCTTCCTCCACCTTCATTTACAAACCCTCATAATAATTTCCCATTACATGCATTTCAACCTTCATTCCATCAAATCACAAACACCAGAAATAATGATAATTCATCTTTGGAACTGCTCTTCAAGTCACAAACCATTCCAAAAACTGAGGCTATGTTCTATGAGCAATACCAACCACAATCGATAGAGGAAGCTATTAACCTGAGATGGAACATTGACAACAATAATAATAATAATAATAATAATGATTTTCAAAACTTATCATTTCCTGTTGAGATGGATGATGATCTGATTGCATTCTCGGGAGCTGCTGCTACTACGGATGATGAATTTACTTCAACACCCTTTGTTAACAGTAGAGGAATAGTAGCCTTAGATGCTCCTATGGAAATAGATTCTTGGCCACTGGCTCAGCTTGTTTAA 1056 0.3769 MMLAMEEVLCELSDHEKKNQQGLPPGFRFHPTDEELITFYLASKVFKNTFFNNVKFAEVDLNRCEPWELPDMAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKDVYSNNRTRALLGMKKTLVFYKGRAPRGEKTKWVMHEYRLHTHFSPSTCKEEWVICRIFHKSVEKRSSLLLQVQGHLGANNNNNSNLTPQKSCLPLHPPSLPPPSFTNPHNNFPLHAFQPSFHQITNTRNNDNSSLELLFKSQTIPKTEAMFYEQYQPQSIEEAINLRWNIDNNNNNNNNNDFQNLSFPVEMDDDLIAFSGAAATTDDEFTSTPFVNSRGIVALDAPMEIDSWPLAQLV 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04631 351 FunFam NAC domain-containing protein 100-like 32 177 - -
Vifa2g04631 351 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 271 - -
Vifa2g04631 351 Gene3D NAC domain 32 177 IPR036093 GO:0003677|GO:0006355
Vifa2g04631 351 SUPERFAMILY NAC domain 18 173 IPR036093 GO:0003677|GO:0006355
Vifa2g04631 351 ProSiteProfiles NAC domain profile. 23 173 IPR003441 GO:0003677|GO:0006355
Vifa2g04631 351 Pfam No apical meristem (NAM) protein 24 152 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04631 Vifa-Chr2 1365577225 1365578708 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04631 1 225 NAC Transcription Factor Family AT1G76420 60.515 2.10e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa2g04631 NAM 1.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04631 - - gmx:100780313 355.525