Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04630 ATGTCTGACCATGATGCTGAGAAAAACCAAGAGCTTCAGCTATTCACTGCACCACAATCAGAAATCGAAACACCAAACACTAATACCACCGTAGATAACAATTATCATGCATCTTCCTCCACTGCCTCTCGCCGCCCCCGGGGGCGTCCTCTTGGCTCCAGGAACAAACCTAAGGCGCCTGTCATTGTAACACATGATAACACTAATGTTGTAAGTTCTCATATGCTTGAAATTAGTGTTGGAGACGACATATCAAAAAGTGTCTTTGATTACGCTCATCGTCAGGGGAGGGGCATATGCATTCTCAATGGAGATGGATTGGTGACACATGTTAGACTTCGCCTACCCACGGGAAGAGTTGTAACCCTACAAGGAAGGTTTGAGATCCTTTTGATATCTGGGACAATTTTCCCGACGCCAACACCGATGAATGTTGGAGGATTGACAGTTTACTTATCAGGAATAAATGGACAAGTGATTGGGGGAAGTGTAATGCCCCCTTTGGTGGCTTCAAGTCTAGTGACTCTCACAGTTGCTTCCTTTGCAAACACTGCACCAGAAAAGCTTTCTTCGGTGGTAGTTGATCAAAAAGAACATCACCTTTCATGCCTCGATGAAGTTGGACAAGTGAGAGTAGGTGATCATGACTTGTTCAATGCTGGAGACTCAACATCTGGAACGAAAAACATGATGAGTAGCAACAACAGTTATCCATCATCCTCTACTCAAGATCGCATATTCGAATGGGATGGTACTGCAACTGTAATTCCCCGACCCAAACATCCCCGTTTCTAG 795 0.4478 MSDHDAEKNQELQLFTAPQSEIETPNTNTTVDNNYHASSSTASRRPRGRPLGSRNKPKAPVIVTHDNTNVVSSHMLEISVGDDISKSVFDYAHRQGRGICILNGDGLVTHVRLRLPTGRVVTLQGRFEILLISGTIFPTPTPMNVGGLTVYLSGINGQVIGGSVMPPLVASSLVTLTVASFANTAPEKLSSVVVDQKEHHLSCLDEVGQVRVGDHDLFNAGDSTSGTKNMMSSNNSYPSSSTQDRIFEWDGTATVIPRPKHPRF 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04630 264 MobiDBLite consensus disorder prediction 221 243 - -
Vifa2g04630 264 MobiDBLite consensus disorder prediction 12 46 - -
Vifa2g04630 264 MobiDBLite consensus disorder prediction 1 59 - -
Vifa2g04630 264 SUPERFAMILY AF0104/ALDC/Ptd012-like 69 189 - -
Vifa2g04630 264 CDD DUF296 74 181 IPR005175 -
Vifa2g04630 264 Gene3D - 72 213 - -
Vifa2g04630 264 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 25 211 IPR014476 GO:0003680
Vifa2g04630 264 ProSiteProfiles PPC domain profile profile. 68 202 IPR005175 -
Vifa2g04630 264 Pfam Plants and Prokaryotes Conserved (PCC) domain 73 182 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04630 Vifa-Chr2 1364536133 1364536927 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04630 38 189 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 53.988 9.60e-46 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04630 - - psat:127088334 451.825