Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04625 ATGACTCGTCCTTTCAGATATCTCGACGAGCTCAACTCGTCTTCCTCCGACTCACCTGATTCCGCCGTCGTTGATTCCGATTTCGTTGTCATCCTCGCCGCTCTCCTCTGCGCTCTCATCTGCGTCCTAGGTCTCGTCGCCGTCTCCCGCTGCGGTTGTCTCCGTCGCTTACGTCTCCCTTCCTCCGCTCTCGCTTCTCAAACCACACCACCTCCTGCAGCAGCTAACAAAGGCGTCAAGAAGAAGATTCTCCGATCTCTTCCGAAGGTTACGGCGACGGAAGAATCCGCGGGGAAATTCTCCGATTGCGCTATTTGTTTGAGCGAGTTCACCGCCGGAGATGAAATCCGCGCGTTACCTCAGTGCGGACATGGCTTCCATGTGTCTTGTATCGATGCGTGGCTCAGATCTCATTCTTCGTGTCCGTCTTGCCGGCAGATACTGGTTGTTTCTAGATGCGATAAGTGCGGCGGAATTCCGGCTCCCGCTCCCGCAACAACCGCTGTCGGAACCAGCTCTACGCCGGCGGCGGAATCGGAAGTTAGGTTAAAGGTAAGGGAGGACGATGGCAACAGTTTCTTGCCTTAG 588 0.5561 MTRPFRYLDELNSSSSDSPDSAVVDSDFVVILAALLCALICVLGLVAVSRCGCLRRLRLPSSALASQTTPPPAAANKGVKKKILRSLPKVTATEESAGKFSDCAICLSEFTAGDEIRALPQCGHGFHVSCIDAWLRSHSSCPSCRQILVVSRCDKCGGIPAPAPATTAVGTSSTPAAESEVRLKVREDDGNSFLP 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04625 195 CDD RING-H2_EL5-like 102 145 - -
Vifa2g04625 195 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Vifa2g04625 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 149 IPR013083 -
Vifa2g04625 195 SUPERFAMILY RING/U-box 84 151 - -
Vifa2g04625 195 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 18 157 - -
Vifa2g04625 195 SMART ring_2 103 144 IPR001841 -
Vifa2g04625 195 Pfam Ring finger domain 102 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04625 Vifa-Chr2 1361847907 1361848494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04625 5 195 C3H Transcription Factor Family AT1G20823 58.586 5.94e-69 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04625 - - pvu:PHAVU_009G007400g 267.7