Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04618 ATGGGAAATCAGAAGCAAAAGTGGACACCTGAAGAAGAAGAAGCTTTTCATCAAGGCGTTCAAAAACACGGTACCGGAAAGTGGAAGAACATTCTCAGAGACAAAGAGTTCGCTGAGAAACTCTGTAGCCGTTCCAACATTGATCTCAAGGATAAATGGCAGAATTTGAGTGTTTTTCCTGGTCAAAACTCTAAAGATAAGTCTAGGACTCCCAAGGCGAAATTGTTAGTTATTGCTTCTGCTCCTGCTACTCCTGCTACTCCGGCTCCTGCTCCGGTTAACGCTGCTCCGCCAAATGTTGCTCCTGCGCCTCTAATTCAGACTCCTACGCGCCACCCTTCTCAAATTGAAGATGCTCCTCCACAGTACAATTCAATGATTTTTGAAGCTTTATCAACAATCAAAGATGCCAATGGGTCTGACTTAAGTGCTATTGTTAGCTTCGTTGAGCAAAAGTACAACCTTCCTCAAAATCAAAATTTCAGAAGGACATTGGGTTCAAAGCTAAGAAGACTTGTTACTCAAGGGAGGCTTGAAAAGGTTCAAAATTGTTACAAGATTAAGGATACCCCAGTGGAGACAAAGCCGGATGTTGACTCAAAACCACTTGCACCAAAAGAAATGAATTCGCCAGCACCAGTGGCATCTAATACTTCGGCATTTGATAATGCAATGAGGGAAGCTTCCGAAATTGTGGCCTACAGAATTTCTGATGCAGAGAATAAGTCATTTTTGGCTGCTGAGGCAGTCAAGGAGACAGAAAGATATGCAAAGTTTGTCGAGGAGAATGATGCAATGTTAAAGTTTGCTGAAGAGCTTTTAGAAAAATGTAAGCTTGGTGAAACTTTTCGCTTCACTTAA 861 0.4204 MGNQKQKWTPEEEEAFHQGVQKHGTGKWKNILRDKEFAEKLCSRSNIDLKDKWQNLSVFPGQNSKDKSRTPKAKLLVIASAPATPATPAPAPVNAAPPNVAPAPLIQTPTRHPSQIEDAPPQYNSMIFEALSTIKDANGSDLSAIVSFVEQKYNLPQNQNFRRTLGSKLRRLVTQGRLEKVQNCYKIKDTPVETKPDVDSKPLAPKEMNSPAPVASNTSAFDNAMREASEIVAYRISDAENKSFLAAEAVKETERYAKFVEENDAMLKFAEELLEKCKLGETFRFT 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04618 286 MobiDBLite consensus disorder prediction 192 217 - -
Vifa2g04618 286 FunFam Telomere repeat-binding factor 1 2 58 - -
Vifa2g04618 286 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa2g04618 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Vifa2g04618 286 SMART h15plus2 109 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa2g04618 286 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Vifa2g04618 286 Pfam linker histone H1 and H5 family 121 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa2g04618 286 SMART sant 4 59 IPR001005 -
Vifa2g04618 286 Gene3D - 117 199 IPR036388 -
Vifa2g04618 286 SUPERFAMILY "Winged helix" DNA-binding domain 120 197 IPR036390 -
Vifa2g04618 286 PANTHER SINGLE MYB HISTONE 4 1 282 IPR044597 GO:0003691
Vifa2g04618 286 MobiDBLite consensus disorder prediction 1 25 - -
Vifa2g04618 286 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Vifa2g04618 286 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Vifa2g04618 286 CDD SANT_TRF 6 56 - -
Vifa2g04618 286 Gene3D - 8 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04618 Vifa-Chr2 1359971174 1359972034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04618 1 283 Single Myb Histone (SMH) Gene Family AT1G72740 44.755 1.13e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa2g04618 Linker_histone 1.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04618 K09422 - cpap:110818338 266.159