Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04611 ATGAATTTGTTTCTGTTTCTTTGTCATCATCATTGGATTGTGTTGGTGTTGGTGTTGATGCTTCCCTATTTGGGTGGTGTTCATTCAAATTCAACTATTTCAAATGTCTCATTTTCAACACCCTCCATTGTTAACATTGGAGCTATCTTCACCTTTGATTCATCCATTGGTAAAGTTGCTAAACTTGCCATGGAACAAGCTGTCAATGATGTCAACTCCAATTCCTCCATTCTACACTCGACTCAGCTTGTTCTCCATATGAAATCTTCCAATTGCAGTGGTTTTGATGGCATGATTCAAGCTTTGCGGTTCATGGAGACGGATGCAGTTGCTATATTAGGTCCACAATCTTCTGTAGTTTCTCACATAGTATCCCATGTTGCAAACGAGCTTCGTGTTCCTATGTTGTCATTTGCAGCTACAGACCCTACACTCTCCTCGCTTCAATTCCCTTTCTTTGTCAGGACTACGCTTTCTGATTCGTATCAGATGACTGCTGTTGCTGAAATCATTGATTTTTATGGATGGAAAGAAGTCATTGCCATTTATGTTGACGATGATTATGGACGAAACGGTGTGTCCGCGTTAGAAGATGCATTGGCAACAAGGCGTTGTAGAATTTCCTACAAGGTGGGAATCAAATCTGGAGCTGATGTTGATAGAAGTGAAATCACGAATTTGCTTGTGAATATGGCGCTAATGCAGTCTCGAGTTATTGTTGTCCACGCCCATGCTAATTCTGGATTTATGATCTTTAAAGTGGCGCATTATCTCGGAATGATGCAGGAGGGTTATGTATGGATAGCCACGGATTGGCTTTCCACTGTTCTAGATTCGGTTTCTCTTCCTTCGGAGAAAATGGATACTCTGCAAGGTGCACTTGTTTTGCGACAGCATACGCCTGATACTGATAGGAAGAAAGCGTTTTTCTCGAGGTGGAATAAGTTAACTGATGGTTCCTTAGGGTTACATTCTTATGGCCTCCGTGCTTACGATTCTGTTTGGCTCGTTGCACAAGCTATTGATAAATTTTTCAGTAAGGGCGGGGTAATTTCGTGGACCAATTACACAAGTTTGCATGATGGTAAGGAAAAGGGTGGTGGTCTTAATCTTGATGCAATGAGCATATTTGACAACGGAAAACTTCTGTTGGACAACATATTGCGGAGCGATTTTGTTGGATTATCAGGTCCAATGAAATTTGATTCAGATAAATCTCTTGTTCGTCCGGCCTATGACATCATTAATGTTGTTGGAAACGGTGTCCGTCGAGTTGGATACTGGTCTAACTATTCTGGTCTCTCGGTTGTATCTCCCGAGACATTGTATGCTAACCCACCTAATAGATCAAGTGCAAACCAACACCTTCACTCAGTGATATGGCCTGGAGAAACATTATCCAAGCCCCGTGGATGGGTCTTCCCAAGCAATGGGAAACAATTGAGAATTGGTGTGCCTATCCGAGTCAGTTACCGTGAATTTGTGTCACCTGTGAAGGGAACTGACATGTTTAAAGGATTCTGCATTGATGTATTTGTGGCAGCTGTAAACTTGTTACCATACGCCGTTCCTTACCGGTTTGTGCCATTCGGAGACGGCCTCAAAAATCCAAGCTACACAGAATTTGTCAATTTAATAACCACTGGTCATTTTGACGGTGCTATTGGTGACATTGCTATTGTCACAAATCGGACAAGGATTGTAGATTTTACACAGCCATATACTGCATCCGGACTTGTTGTGGTGGCCCCTTTTAAGAAGATCAATTCCGGCGGTTGGGCTTTTCTGCAGCCGTTCACTCCTCTTATGTGGATTGTGACTGCTTGTTCCTTCTTTTTTGTCGGGATAGTTGTATGGATTCTCGAACACAGGATAAACGACGAGTTCAGAGGTTCACCTAAACAACAACTTATAACCATAGTATGGTTTAGCCTGTCGACTCTCTTTTTTTCCCACAGAGAGAATACAATGAGTACTCTTGGCCGCGGCGTGATACTCATATGGTTGTTTGTGGTTTTGATCATTAATTCCAGCTACACTGCTAGTTTAACGTCTATACTCACGGTGCAGCAATTATCTTCGCCTATCAGTGGCATAGATAGCTTAAAAGCTAGTGAAGAACCTATAGGGTTCCAAGTTGGTTCATTTGCGGAACGATACTTGACTGAAGATATTGGAATATCCAAATCTAGACTTGTTGCTCTTGGATCGCCGGAGGCATATGCTAAGGCGCTCCAGCTTGGTCCTAATAAAGGAGGTGTTGCTGCTATTATAGATGAACGGGCATACGTCGAAATATTCTTATCAACCCAATGCACATTCAGGATTGTAGGTCAAGAATTCACCAGAAGTGGCTGGGGTTTTGCATTCCCTCGGGACTCCCCTTTGGCGGTGGATTTGTCAACTGCAATTCTACAACTTTCCGAAACTGGTGATCTGCAGCGGATTCATGATAAGTGGATAACTCGAAGTACCTGTAGTTTAGATAATACTGAAATCGATTCAGATCGTCTTCAGCTCAAAAGCTTCTGGGGTCTCTTCATTATTTGCGGGATAGCCTGTGGTATCGCTCTCATTATATATTTTTTGCAGATTATGTTAGTGTTATGGCGCTCTTCTCCTTCTGAACCCGCGTCTAATGTCGGGCCAATTCAAAGATTTCTTTCACTCGTTGACGAGAAGAAAGGTCCGTCGAGGAGTGAAAGAAGAAAGAGGAACGGAGATGAAATGTCGCCTGAAGATCAATTGGGAAGGCAACCAAAGAGGATACAAAGAGTAACAGCTGCATAG 2790 0.4269 MNLFLFLCHHHWIVLVLVLMLPYLGGVHSNSTISNVSFSTPSIVNIGAIFTFDSSIGKVAKLAMEQAVNDVNSNSSILHSTQLVLHMKSSNCSGFDGMIQALRFMETDAVAILGPQSSVVSHIVSHVANELRVPMLSFAATDPTLSSLQFPFFVRTTLSDSYQMTAVAEIIDFYGWKEVIAIYVDDDYGRNGVSALEDALATRRCRISYKVGIKSGADVDRSEITNLLVNMALMQSRVIVVHAHANSGFMIFKVAHYLGMMQEGYVWIATDWLSTVLDSVSLPSEKMDTLQGALVLRQHTPDTDRKKAFFSRWNKLTDGSLGLHSYGLRAYDSVWLVAQAIDKFFSKGGVISWTNYTSLHDGKEKGGGLNLDAMSIFDNGKLLLDNILRSDFVGLSGPMKFDSDKSLVRPAYDIINVVGNGVRRVGYWSNYSGLSVVSPETLYANPPNRSSANQHLHSVIWPGETLSKPRGWVFPSNGKQLRIGVPIRVSYREFVSPVKGTDMFKGFCIDVFVAAVNLLPYAVPYRFVPFGDGLKNPSYTEFVNLITTGHFDGAIGDIAIVTNRTRIVDFTQPYTASGLVVVAPFKKINSGGWAFLQPFTPLMWIVTACSFFFVGIVVWILEHRINDEFRGSPKQQLITIVWFSLSTLFFSHRENTMSTLGRGVILIWLFVVLIINSSYTASLTSILTVQQLSSPISGIDSLKASEEPIGFQVGSFAERYLTEDIGISKSRLVALGSPEAYAKALQLGPNKGGVAAIIDERAYVEIFLSTQCTFRIVGQEFTRSGWGFAFPRDSPLAVDLSTAILQLSETGDLQRIHDKWITRSTCSLDNTEIDSDRLQLKSFWGLFIICGIACGIALIIYFLQIMLVLWRSSPSEPASNVGPIQRFLSLVDEKKGPSRSERRKRNGDEMSPEDQLGRQPKRIQRVTAA 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04611 929 Gene3D - 62 409 - -
Vifa2g04611 929 Pfam Receptor family ligand binding region 61 419 IPR001828 -
Vifa2g04611 929 Gene3D - 769 828 - -
Vifa2g04611 929 Pfam Ligand-gated ion channel 822 854 IPR001320 GO:0015276|GO:0016020
Vifa2g04611 929 MobiDBLite consensus disorder prediction 893 929 - -
Vifa2g04611 929 SUPERFAMILY Periplasmic binding protein-like I 39 473 IPR028082 -
Vifa2g04611 929 CDD GluR_Plant 479 821 - -
Vifa2g04611 929 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 871 IPR015683 -
Vifa2g04611 929 SMART GluR_14 482 823 IPR001320 GO:0015276|GO:0016020
Vifa2g04611 929 FunFam Glutamate receptor 476 591 - -
Vifa2g04611 929 Gene3D - 590 719 - -
Vifa2g04611 929 Gene3D - 159 434 - -
Vifa2g04611 929 MobiDBLite consensus disorder prediction 893 920 - -
Vifa2g04611 929 CDD PBP1_GABAb_receptor_plant 45 437 IPR044440 -
Vifa2g04611 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 57 73 - -
Vifa2g04611 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 330 342 - -
Vifa2g04611 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 117 145 - -
Vifa2g04611 929 FunFam Glutamate receptor 718 825 - -
Vifa2g04611 929 Pfam Bacterial extracellular solute-binding proteins, family 3 504 821 IPR001638 -
Vifa2g04611 929 SUPERFAMILY Periplasmic binding protein-like II 457 823 - -
Vifa2g04611 929 PRINTS Metabotropic glutamate GPCR signature 112 138 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vifa2g04611 929 PRINTS Metabotropic glutamate GPCR signature 163 179 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vifa2g04611 929 PRINTS Metabotropic glutamate GPCR signature 179 196 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vifa2g04611 929 PRINTS Metabotropic glutamate GPCR signature 144 163 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vifa2g04611 929 Gene3D - 474 589 - -
Vifa2g04611 929 PIRSF IGluLR_plant 8 928 IPR017103 -
Vifa2g04611 929 FunFam Glutamate receptor 159 311 - -
Vifa2g04611 929 FunFam Glutamate receptor 592 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04611 Vifa-Chr2 1359355674 1359359263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04611 41 908 Ion Channels AT1G42540 64.213 0.0 1205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04611 K05387 - gmx:102661260 1449.88