Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04610 ATGTATGATTTGGAAGAAACTATTTCATTTACAATGTTAGAGAGCGATGATTACAATAAAAACAATGATTTTCTGGTTGTTGTTGATGTTGATGATGATGTTGTTGATGATAAAATAGAGGGTTTTAAGAATCTGAAACCAATTACAAAGGGTAAGCCTCCAAGGCATGTGTCTGGTTTGAGACACAGCCTTAGCTCTACCAGATTGTTGCAGGCTGCAGCAGATTTGGGTCTAGATGCCGAGGTAACTGGAAGTAAGTCATCTTCTGAGGACAAGACAGGTTATCTACCCATATATCGGTCAGGAAGTTGTGCTGAAAGAGGGCCTAAACAATATATGGAAGATGAACACATATGTATAGATGATCTTACTCAACACATAGGTTCTGCTTCAAATCTTCCTTTTCCTGGAGCTTTCTATGGGGTGTTTGATGGTCATGGAGGAACAGATGCTGCTTTGTTTGTAAGAAATAACATCCTTAGACTCATTGTTGAGGACTCGCAGTTTCCAACTTGTACGGGGAAAGCAATTACAAGTGCGTTTATGAAAGCTGATTATGCATTTGCAGATTCTAGTTCGCTTGATATCTCCTCTGGCACCACTGCTTTAACTGCGCTTGTATTTGGGAGGAACTTGATAATTGCAAATGCGGGGGATTGTCGAGCTGTACTAGGTAGGCGAGGTAGAGCAATTGAGATGTCAATAGACCAGAAACCAAATTGCATTTCAGAAAGGCTAAGGATTGAAAAACTTGGTGGAGTGGTTTATGATGGATACTTGAACGGACAATTATCTGTTTCCCGTGCCTTAGGAGACTGGCACATGAAGGGTCCCAAGGGTTCTGCCTGCCCTTTGAGTGCTGAGCCAGAGTTGCGAGAAATCTGTCTGACTGAAGATGACGAGTTTTTGATTATGGGCTGTGATGGCCTGTGGGATGTAATGAGTAACCAATGTGCTGTGACCATGGCAAGAAAAGAGTTGATGATACATAACGATCCTCAAAGGTGTTCAAGGGAGTTGGTCAGAGAGGCTCTTAAGCGTAATTCATGTGATAATTTAACGGTTATCATCGTATGTTTCTCCCCAGATCCTCCTCCTAGAATAGAGATACCTCCTTCTCGAGTCAGGAGGAGTATATCAGCAGAAAGTCTCACTTTACTTAAGGGTGTATTAGAGTGTTAG 1182 0.4188 MYDLEETISFTMLESDDYNKNNDFLVVVDVDDDVVDDKIEGFKNLKPITKGKPPRHVSGLRHSLSSTRLLQAAADLGLDAEVTGSKSSSEDKTGYLPIYRSGSCAERGPKQYMEDEHICIDDLTQHIGSASNLPFPGAFYGVFDGHGGTDAALFVRNNILRLIVEDSQFPTCTGKAITSAFMKADYAFADSSSLDISSGTTALTALVFGRNLIIANAGDCRAVLGRRGRAIEMSIDQKPNCISERLRIEKLGGVVYDGYLNGQLSVSRALGDWHMKGPKGSACPLSAEPELREICLTEDDEFLIMGCDGLWDVMSNQCAVTMARKELMIHNDPQRCSRELVREALKRNSCDNLTVIIVCFSPDPPPRIEIPPSRVRRSISAESLTLLKGVLEC 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04610 393 Gene3D - 78 363 IPR036457 -
Vifa2g04610 393 SMART PP2C_4 90 358 IPR001932 -
Vifa2g04610 393 ProSitePatterns PPM-type phosphatase domain signature. 139 147 IPR000222 GO:0043169
Vifa2g04610 393 Pfam Protein phosphatase 2C 100 352 IPR001932 -
Vifa2g04610 393 PANTHER PROTEIN PHOSPHATASE 2C 88 358 IPR015655 GO:0004722|GO:0006470
Vifa2g04610 393 CDD PP2Cc 99 360 IPR001932 -
Vifa2g04610 393 ProSiteProfiles PPM-type phosphatase domain profile. 100 360 IPR001932 -
Vifa2g04610 393 FunFam Probable protein phosphatase 2C 22 84 363 - -
Vifa2g04610 393 SUPERFAMILY PP2C-like 94 361 IPR036457 -
Vifa2g04610 393 SMART PP2C_SIG_2 115 360 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04610 Vifa-Chr2 1358645351 1358648208 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04610 10 392 PP2C-type Phosphatase Gene Family AT2G33700 70.573 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04610 K14803 - gmx:100778015 613.224