Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04608 ATGATGTCTGGAAGCTGGGATGGAAATAATGACCCTGGTAGCCAATCGGATGATAGCTTACTTTTCGAGAGGTTGCACATTGAGCCTATATATGATGCTTTTGTATGTCCTTTGACGAAGCAAGTTATGCGTGATCCTGTTACTTCAGAAAACGGACAGACTTTTGAGCGTGAAGCAATCGAAAAATGGTTCAAGGAATGCAAGGAGAGTGGACGGAAACTGGTTTGCCCGTTGACTCTCCGAGAATTAAAAAGCGCAGAGTTGAATCCTAGTTTGGCTTTGCGGAACACCATTGAAGAGTGGACTGCGAGAAATGAAGCTGTACAGCTGGATATGGCTCGTCGTTCGTTGAATACTGCGGGTCCTGAAAAGGAAGCCCTTATGGCTTTGAGGTATGTCCAGCACATCTGTCGAAGAAGTCGGTCGAATAAACATATTGTCCGCAGTGCAGGGCTCATACCGATGATTGTAGATATGCTGAAGAGTAGCAGCCGTAAAGTTCGTTGTAGAGCTCTTGAAACACTTAGAATCGTGGTCGAGGGAGATGACGAGAATAAGGAACTGCTGGCTGAAGGGGACACTGTGCGCACGGTAGTAAAGTTCCTTTCTCACGAGCTTTCTAAAGAAAGAGAGGAGGCTGTCTCCTTGCTCTATGAACTTTCAACCTCTGAAACCCTATGCGAGAAGATTGGTTCAGTCAATGGATCTATTCTTATATTAGTTGGAATGACAAGCAGCAAATCAGAAGACGTATCCACTGTTGAGAAGGCTGATAAAACATTGGAGAATCTGGAAAAATATGAGAATAATGTGCGGCAGATGGCTGAAAATGGTAGATTGCAGCCTCTTTTGACCCATCTTCTTGAAGGTCCACCAGAAACCAAACTGTCCATGGCTGGAATCCTTGGTGAGCTTGTTTTGGATAATGATGTTAAAGTCTTTGTTGCTAGAACTGTGGGAGCGTCTCTGATTGATATCATGAAAAGTGGCAATATGCAGTCAAGAGAAGCTGCACTGAAGGCACTAAATCAGATATCGTCATGTGAGCCAAGCGCGAAGGTTTTATTAGAAGCTGGAATACTTTCTCCTCTTGTCAACGACCTCTTTGCAGTGGGTCCTCATCTGCTTCCCACGCGACTAAAAGAGATTTCTGCTACAATTCTTGCCAGTGTTGTGAATTCAGGAGAAGACTTTGACATGATTCCACTTGGACCTGATGACCAAACTCTGGTCTCGGAGGATATAGTTCATAAGCTACTCCATCTTATTAGCAACACTGGTCCAGCAATTGAGTGCAAACTTCTCCAAGTTCTTGTTGGACTTGCTAGTTCTCCAACCACGGTGCTGAGTCTTGTTTCTGCTATCAAAAGCTCTGGTGCCACTATCAGTTTAGTTCAGTTCATCGAAGCACCACAGAAAGATCTCCGTTTAGCTTCCATAAAACTTCTTCAGAATTTGTCTCCACACATGGGCCCTGAATTAGCCGATGCGCTTCGTGGATCTGTAGGACAGCTTAGTAGTCTAGTTAAAGTCATATCAGAAAATATCGGAATCACTGAAGAGCAAGCAGCTGCTGTTGGCCTCTTAGCTGATTTACCCGAGAGGGATTTGAGCCTCACGAGACAGCTACTCGATGAAGGTGCCTTTCTAATGGCTATATCAAAGGTGATTGCCATCCGGCAGGGGGAAATCAGAGGCACACGGTTCGTGACACCATTTCTTGAAGGGCTTATGAAGATTGTTGCTAGGGTTACATATGTCTTCGCTGATGAGCCTGATGCCGTCGCACTTTGCCGCGATCAAAATCTTGCTGCGCTCTTCATAGAACTGCTTCAAACTAATGGACTTGATACCGTGCAGATGGTTTCTGCTATAGCTTTGGAGAATTTATCATTAGAATCAAAGAATTTAACCAAACTGCCCGAGATTCCAGAACCAACACTCTGTGCTTCATTCTTTTCATGTTTCAGTAAGCCACCAGATACTTCTGGATTATGTAGGATCCACCGTGGGAGGTGTTCGTTAAAAGAAACATTTTGTCTTTACGAAGGGCAGGCCGTCCTTAAGTTAGTAGCTCTGCTGGACCATACAAATGTGAATGTGGTTGAGGCAGCACTTGCAGCCTTATGTACTGTAATAGACGACGGAGTTGATATTGAGCAAGGTGTAATGGTTTTGTGTGAAGCAGAGGGAGTGAAGCCTATACTTGACGTGTTGCTCGAGAAACGGACAGACAATTTGAGGAGGAGGGCAGTTTGGGCAGTGGAGAGACTGTTGCGAACGGACGATATAGCCTATGAAGTTTCTGGAGATCAAAATCTGAGTACTGCACTCGTGGACGCTTTCCAACACGGTGATTATCGAACGAGGCAGATTGCTGAGCGCGCCCTCAAGCATGTTGATAAGATACCTAACTTCTCAGGAATCTTTCCAAACATGGGATGA 2445 0.4491 MMSGSWDGNNDPGSQSDDSLLFERLHIEPIYDAFVCPLTKQVMRDPVTSENGQTFEREAIEKWFKECKESGRKLVCPLTLRELKSAELNPSLALRNTIEEWTARNEAVQLDMARRSLNTAGPEKEALMALRYVQHICRRSRSNKHIVRSAGLIPMIVDMLKSSSRKVRCRALETLRIVVEGDDENKELLAEGDTVRTVVKFLSHELSKEREEAVSLLYELSTSETLCEKIGSVNGSILILVGMTSSKSEDVSTVEKADKTLENLEKYENNVRQMAENGRLQPLLTHLLEGPPETKLSMAGILGELVLDNDVKVFVARTVGASLIDIMKSGNMQSREAALKALNQISSCEPSAKVLLEAGILSPLVNDLFAVGPHLLPTRLKEISATILASVVNSGEDFDMIPLGPDDQTLVSEDIVHKLLHLISNTGPAIECKLLQVLVGLASSPTTVLSLVSAIKSSGATISLVQFIEAPQKDLRLASIKLLQNLSPHMGPELADALRGSVGQLSSLVKVISENIGITEEQAAAVGLLADLPERDLSLTRQLLDEGAFLMAISKVIAIRQGEIRGTRFVTPFLEGLMKIVARVTYVFADEPDAVALCRDQNLAALFIELLQTNGLDTVQMVSAIALENLSLESKNLTKLPEIPEPTLCASFFSCFSKPPDTSGLCRIHRGRCSLKETFCLYEGQAVLKLVALLDHTNVNVVEAALAALCTVIDDGVDIEQGVMVLCEAEGVKPILDVLLEKRTDNLRRRAVWAVERLLRTDDIAYEVSGDQNLSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMG 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04608 814 SMART arm_5 673 714 IPR000225 GO:0005515
Vifa2g04608 814 SMART arm_5 718 760 IPR000225 GO:0005515
Vifa2g04608 814 SMART arm_5 591 632 IPR000225 GO:0005515
Vifa2g04608 814 SMART arm_5 182 222 IPR000225 GO:0005515
Vifa2g04608 814 SMART arm_5 266 307 IPR000225 GO:0005515
Vifa2g04608 814 SMART arm_5 140 180 IPR000225 GO:0005515
Vifa2g04608 814 Gene3D - 316 487 IPR011989 -
Vifa2g04608 814 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Vifa2g04608 814 SUPERFAMILY ARM repeat 409 799 IPR016024 -
Vifa2g04608 814 Gene3D - 575 804 IPR011989 -
Vifa2g04608 814 Gene3D - 116 315 IPR011989 -
Vifa2g04608 814 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Vifa2g04608 814 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Vifa2g04608 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 115 IPR013083 -
Vifa2g04608 814 Coils Coil 257 277 - -
Vifa2g04608 814 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 19 810 - -
Vifa2g04608 814 SUPERFAMILY ARM repeat 122 368 IPR016024 -
Vifa2g04608 814 SUPERFAMILY RING/U-box 25 111 - -
Vifa2g04608 814 CDD RING-Ubox_PUB 31 88 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04608 Vifa-Chr2 1357817826 1357823236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04608 3 814 U-box Gene Family AT1G76390 64.496 0.0 1023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04608 - - gmx:100789746 1375.53