Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04595 ATGAAAGGAGGCAAGTCCAAGGGTGAATCGAAGAAAGCTGAAACCAAGCTTGCGGTGAATAAGAAGGGTGCTGCCGCCACGAAGGGCGGAAAGAAACCAGCCAAGGGAAAGGAACCAAAGGACCCTAACAAACCAAAGAGGCCTCCGAGTGCTTTCTTTGTTTTCATGGAGGACTTTAGGAAGCAGTTCAAAAAGGAAAACCCTGATAACAAAGCTGTGTCTGCAGTTGGTAAAGCAGCTGGAGTAAAATGGAAGTCACTGACTGATGCTGAAAAAGCACCTTATGCTGCCAAGGCAGAGAAAAGGAAGGCTGAATATGAGAAGAGCATGAAGTCCTATACCAAGAAACAGGCTGAAGGCCCAGCTGCTGTTGAAGAAGAAGAAGAATCTGGGAAATCAGAATCTGAGGTGCATGATGAGAATGATGATGAGGAAGAAAGTGAAGAGGAGGAGGATGACGAATAG 465 0.4624 MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMEDFRKQFKKENPDNKAVSAVGKAAGVKWKSLTDAEKAPYAAKAEKRKAEYEKSMKSYTKKQAEGPAAVEEEEESGKSESEVHDENDDEEESEEEEDDE 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04595 154 MobiDBLite consensus disorder prediction 94 128 - -
Vifa2g04595 154 CDD HMG-box_AtHMGB1-like 46 106 - -
Vifa2g04595 154 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Vifa2g04595 154 Coils Coil 96 116 - -
Vifa2g04595 154 Pfam HMG (high mobility group) box 45 113 IPR009071 -
Vifa2g04595 154 MobiDBLite consensus disorder prediction 1 51 - -
Vifa2g04595 154 Gene3D High mobility group box domain 28 130 IPR036910 -
Vifa2g04595 154 MobiDBLite consensus disorder prediction 85 154 - -
Vifa2g04595 154 MobiDBLite consensus disorder prediction 31 45 - -
Vifa2g04595 154 SUPERFAMILY HMG-box 36 117 IPR036910 -
Vifa2g04595 154 MobiDBLite consensus disorder prediction 1 18 - -
Vifa2g04595 154 MobiDBLite consensus disorder prediction 129 154 - -
Vifa2g04595 154 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 149 IPR031061 -
Vifa2g04595 154 SMART hmgende2 44 115 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04595 Vifa-Chr2 1355160234 1355161594 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vifa2g04595 HMG_box 2.6e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04595 K25507 - lang:109352139 146.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04595 2 1355160234 1355161594 Vifa2g04595 2 1355160234 1355161594 ECH