Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04591 ATGTTAGTAGGGTTGAAGTTGATAATGGTTCTCGATCTGCTCATACGCCAGGGGAATGGTGTAACAAATGCATCAGAGGGTGAATGGAAGAGAGAATGTTCAGAGGGAAAGGGGAAGAGTGTGATGAGTGGGAAAAGTAGAACGGCTGCGGCTAGTTTTGGTTTTCGAGAGCTTGCGACGGCGACGAGGGGTTTTAATGAAGCGAATTTGATTGGGGAAGGTGGTTTTGGAAAAGTTTTCAAGGGCCGTCTTTCAACCGGCGAGCTTGTTGCTGTTAAACAATTGAGTCATGATGGCCGTCAAGGTTTTCAGGAGTTTGTGACTGAAGTTCTTATGCTGAGTCTGCTGCATCATTCTAATCTTGTTAAGTTGATTGGCTATTGTACTGATGGAGATCAAAGGCTTTTGGTTTATGAATACATGCCTATGGGATCTCTTGAAGATCATCTTTTTGATGTTCCCCAAGACAAAGAACCTCTAAGTTGGCGTACTCGAATGAAGATTGCTGTTGGAGCAGCTCGGGGCCTTGAGTATCTACATTATTTTGGACTTGCTAAACTAGGACCTGTTGGAGACAATACCCATGTTTCAACCAGAGTAATGGGTACATACGGCTACTGTGCGCCAGAATATGCGATGAGCGGCAAATTAACTCTCAAATCTGATATCTACAGCTTTGGCGTGGTTTTGTTGGAGTTGATCACTGGACGTAGGGCAATAGACGCTACTAAAAAACCAGGAGAGCAAAACTTAGTTTCATGGTCTCGCCCGTATTTTAGTGACCGGAGAAGGTTTGTACACATGGCTGACCCTCTTCTGCAAGGACAAATCCCTGTCCGCTGTTTGCATCAAGCCATTGCTATAACTGCTATGTGTCTCCAGGAGCAACCAAAATTCCGTCCACTCATCGGTGATATTGTTGTTGCACTAGAATACCTAGCTTCTCAGAGTATTGAAGCCCATAGATATGGTGTGCGCAGCCCACCGCTGCAACCATCTTCCATTATGGAAAGAGATTAA 1020 0.448 MLVGLKLIMVLDLLIRQGNGVTNASEGEWKRECSEGKGKSVMSGKSRTAAASFGFRELATATRGFNEANLIGEGGFGKVFKGRLSTGELVAVKQLSHDGRQGFQEFVTEVLMLSLLHHSNLVKLIGYCTDGDQRLLVYEYMPMGSLEDHLFDVPQDKEPLSWRTRMKIAVGAARGLEYLHYFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRRAIDATKKPGEQNLVSWSRPYFSDRRRFVHMADPLLQGQIPVRCLHQAIAITAMCLQEQPKFRPLIGDIVVALEYLASQSIEAHRYGVRSPPLQPSSIMERD 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04591 339 Pfam Protein tyrosine and serine/threonine kinase 182 308 IPR001245 GO:0004672|GO:0006468
Vifa2g04591 339 Pfam Protein tyrosine and serine/threonine kinase 69 180 IPR001245 GO:0004672|GO:0006468
Vifa2g04591 339 FunFam probable serine/threonine-protein kinase RLCKVII 37 140 - -
Vifa2g04591 339 PIRSF ILK 8 187 - -
Vifa2g04591 339 PIRSF ILK 181 328 - -
Vifa2g04591 339 SUPERFAMILY Protein kinase-like (PK-like) 48 308 IPR011009 -
Vifa2g04591 339 Gene3D Transferase(Phosphotransferase) domain 1 182 314 - -
Vifa2g04591 339 Gene3D Phosphorylase Kinase; domain 1 38 140 - -
Vifa2g04591 339 PANTHER OS07G0668900 PROTEIN 39 180 - -
Vifa2g04591 339 ProSitePatterns Protein kinases ATP-binding region signature. 71 93 IPR017441 GO:0005524
Vifa2g04591 339 ProSiteProfiles Protein kinase domain profile. 65 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04591 339 Gene3D Transferase(Phosphotransferase) domain 1 141 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04591 Vifa-Chr2 1352700016 1352702507 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04591 46 334 Glycoside Hydrolase AT3G07070 57.009 3.15e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vifa2g04591 PK_Tyr_Ser-Thr 9e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04591 - - qsu:112031930 460.685