Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04590 ATGTCACACAACAACCACCAAGCATCATCCTCCACTCTCGGTCGTCGTCCTCCAGGACGTCCACCTGGCTCCAAAAACAAACCTAAAATGCCTATCATAGAAAAATATGATAATCCGAATGCACTAAATTCTCATATCCTTGAGATCACTTCTGGATCTGACGTGTCACTCAGTCTCTTCGATTACGCTCGTCGTCAAGGGAGGGGCATCAGTATCCTCTGTGGAAATGGAATAGTAACGCATGTTAGGCTTCTTCAACCCACAGGAAATATTGAAATCCTTCAGGGAAATTTTGAGATACTTTCGATATCAGGGACAATTTTTCCTTCAGAAACACTATCAAGTGCAGGAGAATTGGTAGTTCACTTAATGGGAACGTCAGGGCAGGTGATTGGGGGAATTGTCATGCCCCCTCTAATGACATCAAGTTCAGTTACTTTGATGGCTACTTCTTTTGTAAACACTGCATCTGAAAATATTTCTTTGATGACCAATAATCTGATAGAATATGAGTCTGGACATGTGACTAAAAGTGATATAGGCTTGCTCAATGCTGAAAGATCTATTTCTGAAATGATCAACAAGATGAGTTCCAACACCAATCATTTCGGATGA 615 0.4114 MSHNNHQASSSTLGRRPPGRPPGSKNKPKMPIIEKYDNPNALNSHILEITSGSDVSLSLFDYARRQGRGISILCGNGIVTHVRLLQPTGNIEILQGNFEILSISGTIFPSETLSSAGELVVHLMGTSGQVIGGIVMPPLMTSSSVTLMATSFVNTASENISLMTNNLIEYESGHVTKSDIGLLNAERSISEMINKMSSNTNHFG 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04590 204 CDD DUF296 43 152 IPR005175 -
Vifa2g04590 204 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 11 165 IPR014476 GO:0003680
Vifa2g04590 204 MobiDBLite consensus disorder prediction 1 32 - -
Vifa2g04590 204 ProSiteProfiles PPC domain profile profile. 39 173 IPR005175 -
Vifa2g04590 204 SUPERFAMILY AF0104/ALDC/Ptd012-like 39 158 - -
Vifa2g04590 204 Pfam Plants and Prokaryotes Conserved (PCC) domain 44 154 IPR005175 -
Vifa2g04590 204 Gene3D - 43 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04590 Vifa-Chr2 1352283813 1352284427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04590 9 162 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 49.697 2.33e-45 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04590 - - psat:127084876 293.893