Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04589 ATGGGAAACTGTTTGGCGAATTCAGATCATGACAGAAAGATTCAGAAAAGGAAGAAGCTACAAAACAATACTTCTTCTAGAGATGGTGATGAGAGAAGAGTTGGTGGAAAAATTGTGACCCCGAATCTGAAAATGTTCACATTAGATGAGTTGAAAAGTGTGACAAGAAACTTCAGACCAGACACAGTGCTGGGTGAAGGTGGTTTTGGACGTGTTTTCAAAGGATGGATCGATAAAAACACTTATAAACCGTCTAAAGTAGGTGTTGGAATTCCCGTCGCGGTTAAGAAATCCAGCGCCGATAGTCTCCAAGGCTTACAAGAATGGCAGAGTGAAGTGAAGTTTTTGGGGAAATTCTCGCATCCAAATCTTGTTAAACTACTTGGGTTTTGCTGGGAGGAAGATCAGTTCCTGCTTGTGTATGAATACATGCAAAAGGGCAGTTTGGAAAGTCACCTATTCAAAAGTCCAGAACCACTTTCTTGGGAAATAAGGATGAAGATAGCTATAGGAGCTGCTAGAGGATTGGAATTTTTGCATACTTCAGATAAGTCTATTATTTATAGAGACTTCAAATCCTCCAACATTTTGCTTGATGGGGATTTCAATGCAAAGTTGTCTGACTTTGGGTTGGCAAAGCTTGGGCCAGTTAATGGTAGGTCACATGTGACCACCAGAATCATGGGGACCTATGGTTATACAGCACCGGAGTACATGGCTACAGGTCATCTTTATGTGAAAAGCGATGTGTATGGATTTGGTGTTGTTCTTCTAGAAATGTTAACTGGCTTAATAGCACTTGACACAGATAGGCCAACATATGAGATGAATTTGGTGGATTTCACAAAGGGATATCTACATGACAAAAAGAAACTCAAAAAGATCATGGATCAAAGATTGGATCAACAATATCCTCTAGCAGCAGCATTTCTTATAGCACAACTTATACTCCAATGTTTAGAAGCTGACCCTAAAAATAGACCTTCTATGGAGCAAGTATTGCAAATTTTAGAAAAGGCTCAAACTATTAAATTTAAGCCCAAAGTGAAAAAACCGAGAAGTGCGCAACAGAAAAATAAGAGATCAAAAGAACATTCTACTAATGGCCGATCTCTGACTTCTCATAATAATAGTATATCTGAAACACAAATTCATTCTCTGCAATAG 1167 0.3882 MGNCLANSDHDRKIQKRKKLQNNTSSRDGDERRVGGKIVTPNLKMFTLDELKSVTRNFRPDTVLGEGGFGRVFKGWIDKNTYKPSKVGVGIPVAVKKSSADSLQGLQEWQSEVKFLGKFSHPNLVKLLGFCWEEDQFLLVYEYMQKGSLESHLFKSPEPLSWEIRMKIAIGAARGLEFLHTSDKSIIYRDFKSSNILLDGDFNAKLSDFGLAKLGPVNGRSHVTTRIMGTYGYTAPEYMATGHLYVKSDVYGFGVVLLEMLTGLIALDTDRPTYEMNLVDFTKGYLHDKKKLKKIMDQRLDQQYPLAAAFLIAQLILQCLEADPKNRPSMEQVLQILEKAQTIKFKPKVKKPRSAQQKNKRSKEHSTNGRSLTSHNNSISETQIHSLQ 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04589 388 SUPERFAMILY Protein kinase-like (PK-like) 43 365 IPR011009 -
Vifa2g04589 388 ProSiteProfiles Protein kinase domain profile. 58 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04589 388 PIRSF TyrPK_CSF1-R 155 387 - -
Vifa2g04589 388 PIRSF TyrPK_CSF1-R 57 161 - -
Vifa2g04589 388 Pfam Protein tyrosine and serine/threonine kinase 62 337 IPR001245 GO:0004672|GO:0006468
Vifa2g04589 388 CDD STKc_IRAK 64 339 - -
Vifa2g04589 388 MobiDBLite consensus disorder prediction 369 388 - -
Vifa2g04589 388 PANTHER OS01G0588500 PROTEIN-RELATED 24 341 - -
Vifa2g04589 388 Gene3D Phosphorylase Kinase; domain 1 42 143 - -
Vifa2g04589 388 FunFam Serine/threonine-protein kinase BIK1 24 143 - -
Vifa2g04589 388 ProSitePatterns Protein kinases ATP-binding region signature. 64 97 IPR017441 GO:0005524
Vifa2g04589 388 MobiDBLite consensus disorder prediction 1 34 - -
Vifa2g04589 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Vifa2g04589 388 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 144 350 - -
Vifa2g04589 388 Gene3D Transferase(Phosphotransferase) domain 1 144 366 - -
Vifa2g04589 388 MobiDBLite consensus disorder prediction 346 388 - -
Vifa2g04589 388 MobiDBLite consensus disorder prediction 9 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04589 Vifa-Chr2 1351340563 1351342460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04589 9 337 Glycoside Hydrolase AT3G07070 44.144 8.27e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa2g04589 PK_Tyr_Ser-Thr 4.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04589 - - aprc:113865973 539.265