Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04586 ATGGGAGATGGTGCTGCAGTGACATCATCTGCGACCATGATGGAAGCACCGCCACAAGATGTAAATTCAATGGATTTTGATTATATGAGTGAGCTTTTATTAGATGGTTGTTGGTTGGAAGCTTCTGCGGATGGATCTGAGTTCTTGCTGCAAAGTTCTCCTTTTTCAAATCCAATCTTTGACAATACGTTTTCTTGGCCTGCCTTGGAGAACAACGAGCCGCCGCCCCGCATTGAGGATCGGAATGACTCACAAGATGCACCTCTTGGCACTGAACAGGAAAATCGGAGTATGGTTAATAATGTCGGTTGTAGTGACAGGCGACAGTGTGAGTTCGAGACTCATTTGGGTGAAGGGGTTAGTAGGTTGTGGATTCCACCAGCGCCGAATCAAGGACCTGGTGGATCTTCCATAACGGAGAAGCTGATACGAGCTCTCAAGTGGATCAAAGATTTCAATAGGAACAAGGATATGCTTATACAAATATGGGTGCCGGTTAATAGAGGGGATGATAGGCCGATTCTGAGGGCTAATGATCTTCCATTTTCACTTGAACCAAGTTCTTTAAATCTTGCAAAGTACCGAGAAATTTCTGTGAGATATCAGTTTTCTGTAGAGGAGGAGGACTCGAAGGAGTTGGTGGCAGGTTTGCCCGGTCGAGTTTATAGGGATAAGATTCCTGAGTGGACACCTGATGTTCGATTCTTCAGGAGCGAAGAGTATCCGCGAGTTGACCATGCTCAAGAGTGTGATATACACGGAACATTAGCAGTTCCGGTCTTTGAACAAGGGAGCAGGACATGTTTGGGCGTTATTGAAGTGGTGATGACTACGCAGCAGAGCAACTATGGCCGCGAACTTGAGACTGTTTGCAAAGCGCTAGAGGTTGTTGATCTCAGAAGCTCTGGACATTCAAGCCTTCAGAATGTGAAGGCAAGCGACAAGTCCTATGAAACCGCACTACCCGAGATTCAAGAGGTTTTGAGATCTGCATGTGAAATGCACAAATTACCTTTGGCTCAGACTTGGGTCTCTTGCATCCAACAGGGAAAAGATGGTTGCCGGCACTCTGATGATAATTATGCACACTGTATATCTCCAGTGGAGTATGCTTGCTATGTTGGTGATTCCTCGGTCAGGTTTTTTCACGAGGCTTGCATGGAGCATCACTTGTTAATAGGTCAAGGTGTTGCCGGGGGTGCTTTTATGACAAACCAACCGTGCTTCTCGGCTGACATTACTTCTTTAAGCAAGACCGATTATCCACTGTCTCATCATGCCAGGTTGTTTGGGTTGCGGGCTGCAGTTGCCATACGACTCCGAAGCATCTATAATACTTCGGATGACTATGTTCTTGAGTTCTTCTTGCCTGTAGATTGCAATGACAGTGAAGAACAGAAAAAGATGCTCACATCACTGTCCATGATTATTCAAAGGGTTTGCCGCAGCTTGCGAGTTATAACCAATAAGGAATTGGAGAAAAATAACTTATCAGCTAATGAAGTAATGGCTGCCGCTGATAGTAGATTTGCTAGGAATGCAATTAGGTCGGACCTCCAAGACAGTAGAACGGCTGCCTCATTGGGTAGCGAAGAAAAGTTTATCGAAACAATGAGTAAAAAATTCGCAGAACAAAGGCGGCTACAAGAAAATCTTATTTTAAAAGGAGATGCTGACCATGGTAGGGAGTGTTCTCCTTCTGTTCAGGGTAACTTCTTGTCAAGTTTGGGAGTAAATAGAACAACGGGAGAGAAAAGACGGGCCAAGGCGGAGAAAACTATCACTCTTCAAGTCCTGAGGCAATATTTCGCTGGAAGTCTAAAAGATGCTGCGAAGAATATTGGCGTCTGTACTACAACCCTTAAAAGGATATGCCGTCAACATGGTATTAAGCGATGGCCTTCTCGGAAGATAAAAAAGGTTGGTCACTCCTTGCAGAAACTTCAACTTGTCATTGACTCGGTTCAAGGTGCCTCTGGTTCATTTCAATTTGATTCCTTCTATTCAAAATTCTCGGATCTATCGTCTCCAAATTTATCAGGAACCACCCTGATCTCTACTCTGAATCAAATCGATAATCCAGTCTCGTTAAGCATACAACCAGATCCCAACGCCTTGAGTCCAGAAGGTGCGTCAAAATCACCCTCGTCTTCATGTAGTCAAAGTTCCTTTTCAAGCCATTCTTGTTCCAGCATGTCAGAGCAACAGCACCATACAAGCAATGTTGCTGCTGGTATCAAAGATCTATCCGTTGGCGAAGATTCCGTTGATGTGTTGAAGAGAATCAGAAGTGAAACAGAACTTATAAATCTGATTCAAGATAATAAAACAAAGCTCATGCCAAGATCACAAAGCCAGGAAACACTTGACGAGAAAGCCCGGTTTAGGTTGCCAAAGAACTGGAGTTATGAAGATCTTGTGCAGGAAGTCGCTAGGAGATTTAATATTTGGAGGAGTGCATTGATGAGTTCTTCAGAATTTAGATAG 2487 0.4411 MGDGAAVTSSATMMEAPPQDVNSMDFDYMSELLLDGCWLEASADGSEFLLQSSPFSNPIFDNTFSWPALENNEPPPRIEDRNDSQDAPLGTEQENRSMVNNVGCSDRRQCEFETHLGEGVSRLWIPPAPNQGPGGSSITEKLIRALKWIKDFNRNKDMLIQIWVPVNRGDDRPILRANDLPFSLEPSSLNLAKYREISVRYQFSVEEEDSKELVAGLPGRVYRDKIPEWTPDVRFFRSEEYPRVDHAQECDIHGTLAVPVFEQGSRTCLGVIEVVMTTQQSNYGRELETVCKALEVVDLRSSGHSSLQNVKASDKSYETALPEIQEVLRSACEMHKLPLAQTWVSCIQQGKDGCRHSDDNYAHCISPVEYACYVGDSSVRFFHEACMEHHLLIGQGVAGGAFMTNQPCFSADITSLSKTDYPLSHHARLFGLRAAVAIRLRSIYNTSDDYVLEFFLPVDCNDSEEQKKMLTSLSMIIQRVCRSLRVITNKELEKNNLSANEVMAAADSRFARNAIRSDLQDSRTAASLGSEEKFIETMSKKFAEQRRLQENLILKGDADHGRECSPSVQGNFLSSLGVNRTTGEKRRAKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGSFQFDSFYSKFSDLSSPNLSGTTLISTLNQIDNPVSLSIQPDPNALSPEGASKSPSSSCSQSSFSSHSCSSMSEQQHHTSNVAAGIKDLSVGEDSVDVLKRIRSETELINLIQDNKTKLMPRSQSQETLDEKARFRLPKNWSYEDLVQEVARRFNIWRSALMSSSEFR 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04586 828 Pfam RWP-RK domain 593 641 IPR003035 -
Vifa2g04586 828 MobiDBLite consensus disorder prediction 696 739 - -
Vifa2g04586 828 Coils Coil 489 509 - -
Vifa2g04586 828 ProSiteProfiles RWP-RK domain profile. 580 661 IPR003035 -
Vifa2g04586 828 MobiDBLite consensus disorder prediction 66 93 - -
Vifa2g04586 828 PANTHER PROTEIN NLP8 92 816 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04586 Vifa-Chr2 1350084238 1350087503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04586 23 816 NLP Transcription Factor Family AT1G76350 46.049 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vifa2g04586 RWP-RK 6.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04586 - - gmx:100790922 1094.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04586 2 1350084238 1350087503 Vifa2g04586 2 1350084238 1350087503 ECH