Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04557 ATGCCGATTGGACTCACTCCTCACATAATTGAGATTGATGCTGGAGCCGATCTATTATACACTCTATTTGAATTTGCTCGAAGTCGTGGGAGATCCATTCACATCCTCAATGGAATAGGAATGGTGGCAGATGTCACGCTTATACAATCTAATAGGAGTTTTGTATCTGTTCTAGGAATGTTTGATCTTCTGTCAATTCGTGGTACAATTATCCCGTTGTCGACAACGGAGTGTTTAGGAGTATTGCAAATTACCTTATCAAACTCTGCTGATGACGAAGATGACGTGATTCAAGGGAGTGTGATCTCCCCACTAGTGGCTTATAGTCCAATGCGAGTCACATTTGTCTCCTTTCCAAACCCTGCATTTTAA 372 0.4167 MPIGLTPHIIEIDAGADLLYTLFEFARSRGRSIHILNGIGMVADVTLIQSNRSFVSVLGMFDLLSIRGTIIPLSTTECLGVLQITLSNSADDEDDVIQGSVISPLVAYSPMRVTFVSFPNPAF 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04557 123 Gene3D - 7 123 - -
Vifa2g04557 123 CDD DUF296 6 107 IPR005175 -
Vifa2g04557 123 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 5 123 IPR014476 GO:0003680
Vifa2g04557 123 SUPERFAMILY AF0104/ALDC/Ptd012-like 5 122 - -
Vifa2g04557 123 ProSiteProfiles PPC domain profile profile. 1 123 IPR005175 -
Vifa2g04557 123 Pfam Plants and Prokaryotes Conserved (PCC) domain 7 119 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04557 Vifa-Chr2 1340108839 1340109210 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04557 8 123 AT-hook Motif Nuclear Localized (AHL) Family AT3G60870 36.207 3.83e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04557 - - cam:101492608 83.5741