Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04555 ATGAGTGCCCTAACCTTACCTCTGCAATATCCCGCTGCTCGTAGAGACGACACAGTCGTCGACGACTACCACGGCGTCAATGTCGCCGACCCCTATCGATGGCTCGAAGATCCTGATGCTGAAGAAGTGAAAGAGTTTGTTGAGAAACAAGTTCAACTCACCAATTCAGTGATTGCAGAATGCGAAACGAGATCGAAGCTTAATGAAAGAATTACTAAACTGTTTGATCATCCTCGTTATGGCGCTCCTTTTAAAAAAGGGGATAAGTATTTTTACTTCCATAACACCGGTCTTCAGCCTCAGGATATTCTCTATGTCCAGGATAGTTTGGAGGGAGAGCCAGAGGTTTTGCTTGATTCCAATGCCTTAAGTGAAGATGGAACTGTTTCGTTGAACACATTTTCTGTGAGTGAAGATGCCAAGTACTTGGCTTATGCGCTTAGTTCCAGTGGTAGCGATTGGGCGACTATAAAAGTGATGCGCATTGAGGACAAGACTGTTGAGCATGATACTTTATCATGGGTTAAATTTTCCTCTATTAGTTGGAGTCATGATAACTTGGGTTTCTATTACAGCCGCTATCCAGCACCCAAAGATGGAGAAGTGGTAGATGCTGGGACTGAGACAAACTCTAATCTTTATCATATGCTTTATTATCATTTTCTGGGTACGGATCAAGAAGGAGATATTTTGTGTTGGAAAGATCTTCAAAACCCTAAATATACAGTTGGAGGAATTGTTACTGTTGATGGGAAGTATCTCCTCCTTTATATTTCAGACGGATGTGATCCAGTTAACAAACTTTACTACTCTGACATAACTAATCTTCCCAGCGTATTTGAAGGTTTCCGCAGTGATAATTCCGCCCTCCCTTTCGTCAAACTTATTGATAACTTTGATGCGAAGTACGACTACATTGCAAATGATGACACTGAGTTTACATTTTTAACTAATAAAGATGCTCCAAAGTATAAACTAGTCCGAGTAGATTTGAAGAACCCAAACACATGGGCTGATGTTCTTCAAGAGTCTAAAAATGATGTACTTGAGTCGGCGGTTGCTGTAAATGGTAATCAACTGATAGTTAGTTACTTGAGCGATGTGAAGCATCTTCTACAAGTAAGAGACTTAAAAACAGGTTCATTGCAGCATCAACTGCCAATTGACATTGGCACAGTTTCTGAAATTTCTGCACGGCGGGAAGATAATGTGGTCTTCATTAGCTTTACAAGCTTTCTATCTCCCGGTATCGTTTATCAGTGCAACCTGGGAACAGGGATTCCTGATCTGAAGATATTTCGTGAAATTGCAGTCCCTGGGTTTGACCGCTCCGAGTTTCAAGTCAATCAGGTTTTTTTCCCTAGTAAAGATGGTACCAAGATCCCAATGTTCATTGTTGCGAAAAAGGGCATTATTTTGGATGGTTCACACCCGTGTCTATTATATGGATATGGTGGTTTTAACATCAGTATCACACCGTCATTCAGTGTTAGTCGCATTGTACTCACAAAACATTTAGGTTTTGTTTACTGCATTGCGAATATTCGCGGTGGTGGAGAATATGGGGAGGAATGGCATAAAGCAGGTTCCCTTGCTAAAAAGCAGAATTGCTTTGATGACTTCATTTCTGCAGCCGAATACCTTATATCCACTGGTTATACCCAATCGAAAAAGTTATGCATTGAGGGTGGAAGCAACGGTGGCCTTCTTGTTGGTGCTTGTATAAATCAGAGACCTGATCTCTTTGGCTGTGCATTGGCTCATGTTGGCGTTATGGACATGCTGCGGTTCCACAAATTTACCATAGGTCATGCTTGGACCTCAGATTATGGTTGTGCAGACAAGGAGGAAGAGTTTCATTGGCTAATCAAGTACTCACCATTGCATAATGTCCGGCGACCGTGGGAAGAGCATCCTGACAAGTCAGTTCAGTACCCAGCAACCATGTTGTTGACAGCAGATCACGATGATCGAGTTGTGCCACTTCACTCATTGAAGCTATTAGCGACCATGCAGTATGAGCTATGCAGCAGCTTAAAGGAAAGTCCCCAAACGAACCCTATAATTGGTCGCATTGACTGCAAAGCTGGACATGGAGGAGGTCGTCCTACACAGAAAATGATCGATGAAGCTGCTGATCGATTCAGTTTTATGGCTAAAATGTTAGAAGCACATTGGATTGAATAG 2187 0.4216 MSALTLPLQYPAARRDDTVVDDYHGVNVADPYRWLEDPDAEEVKEFVEKQVQLTNSVIAECETRSKLNERITKLFDHPRYGAPFKKGDKYFYFHNTGLQPQDILYVQDSLEGEPEVLLDSNALSEDGTVSLNTFSVSEDAKYLAYALSSSGSDWATIKVMRIEDKTVEHDTLSWVKFSSISWSHDNLGFYYSRYPAPKDGEVVDAGTETNSNLYHMLYYHFLGTDQEGDILCWKDLQNPKYTVGGIVTVDGKYLLLYISDGCDPVNKLYYSDITNLPSVFEGFRSDNSALPFVKLIDNFDAKYDYIANDDTEFTFLTNKDAPKYKLVRVDLKNPNTWADVLQESKNDVLESAVAVNGNQLIVSYLSDVKHLLQVRDLKTGSLQHQLPIDIGTVSEISARREDNVVFISFTSFLSPGIVYQCNLGTGIPDLKIFREIAVPGFDRSEFQVNQVFFPSKDGTKIPMFIVAKKGIILDGSHPCLLYGYGGFNISITPSFSVSRIVLTKHLGFVYCIANIRGGGEYGEEWHKAGSLAKKQNCFDDFISAAEYLISTGYTQSKKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRFHKFTIGHAWTSDYGCADKEEEFHWLIKYSPLHNVRRPWEEHPDKSVQYPATMLLTADHDDRVVPLHSLKLLATMQYELCSSLKESPQTNPIIGRIDCKAGHGGGRPTQKMIDEAADRFSFMAKMLEAHWIE 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04555 728 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 11 426 IPR023302 GO:0004252
Vifa2g04555 728 SUPERFAMILY alpha/beta-Hydrolases 446 672 IPR029058 -
Vifa2g04555 728 Gene3D alpha/beta hydrolase 19 718 IPR029058 -
Vifa2g04555 728 SUPERFAMILY Peptidase/esterase 'gauge' domain 6 439 - -
Vifa2g04555 728 PANTHER PROLYL ENDOPEPTIDASE 6 726 - -
Vifa2g04555 728 Gene3D - 78 437 - -
Vifa2g04555 728 ProSitePatterns Prolyl endopeptidase family serine active site. 540 570 IPR002471 GO:0004252|GO:0006508
Vifa2g04555 728 FunFam Prolyl endopeptidase 78 437 - -
Vifa2g04555 728 FunFam Prolyl endopeptidase 421 718 - -
Vifa2g04555 728 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 505 529 IPR002470 GO:0004252|GO:0006508
Vifa2g04555 728 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 563 583 IPR002470 GO:0004252|GO:0006508
Vifa2g04555 728 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 533 552 IPR002470 GO:0004252|GO:0006508
Vifa2g04555 728 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 478 496 IPR002470 GO:0004252|GO:0006508
Vifa2g04555 728 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 645 667 IPR002470 GO:0004252|GO:0006508
Vifa2g04555 728 Pfam Prolyl oligopeptidase family 493 723 IPR001375 GO:0006508|GO:0008236
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04555 Vifa-Chr2 1340077912 1340084172 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04555 478 610 Carbohydrate Esterase AT5G36210 29.630 3.16e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04555 K01322 - gmx:100776544 1263.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04555 2 1340077912 1340084172 Vifa2g04555 2 1340077912 1340084172 ECH