Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04547 ATGATAACAGAAATCTCCGGCAAACACTATCCTCCCCCACTCGCCTCTCACAACGACGTCGTTAACGACGCTACTCTTTTCTGGGACACTCTTCGTCGCTTTCACTTTCTCATGGCTACAAAATTCATGATTCCTGTGATTGGAGGTAAGGAACTGGATTTGCACGTTCTCTACGTGGAGGTTACAGCCAGAAGCGGTTATGAGAAAGTTGTTGCCGAGAAAAAATGGAGAGAAGTCGGTACTGTTTTTAGATTCTCATCTACTACTACGAGCGCTTCTTTTGTGTTGAGAAAACATTATTTGAATCTCCTTTACCATTACGAACAAGTTCATTTCTTCAAACTTAAAGGTCCTATTTACATTCCATCACCAGATACATTTTCTGGAAATAGTCCGTCGTGGAAACCTGAATTAGCTATTGTTCAATATTCACATAAGATGGTAAACAATAGTTCTGAATCTCACGACGAAGTGGAGGTAGAAAGTTCATGTGTTGGAAAAGGAACAATAGAAGGGAAATTTGATTGTGGATATATAGTATCAGTGAAATTGGGTTCTGAGGTTTTGAGAGGTGTGCTTTATCATCCAGAACAAGTGGTTGCTGCTTCTCCTTCACAACATGGCAGTGCCACTGCCATTGTACCATTCAATCACAAATCTTATGGTTCTGGTAGGAGGAGGAGAAGAAAAAGAAAGTGTGATCCTAACTATCCAAAGCCAAATAGGAGTGGCTATAACTTCTTCTTTGCTGAAGAGCATTACAAACTCAAACAACTTTACCCAAATAGAGAAAGGGAGTTTACTAAAATGATTGGCCAGTCATGGAATTGTCTCAGCCCTGAAGAAAGAATGATTTACCAAAACATTGGCTTAAGGGATAAAGAAAGGTACAAAAGAGAATTGACAGAGTACAAAGAGAAAATGAAGGATGGGCAGATAGAAGAATTTGGAAACTCAAAATAA 963 0.3936 MITEISGKHYPPPLASHNDVVNDATLFWDTLRRFHFLMATKFMIPVIGGKELDLHVLYVEVTARSGYEKVVAEKKWREVGTVFRFSSTTTSASFVLRKHYLNLLYHYEQVHFFKLKGPIYIPSPDTFSGNSPSWKPELAIVQYSHKMVNNSSESHDEVEVESSCVGKGTIEGKFDCGYIVSVKLGSEVLRGVLYHPEQVVAASPSQHGSATAIVPFNHKSYGSGRRRRRKRKCDPNYPKPNRSGYNFFFAEEHYKLKQLYPNREREFTKMIGQSWNCLSPEERMIYQNIGLRDKERYKRELTEYKEKMKDGQIEEFGNSK 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04547 320 Coils Coil 294 314 - -
Vifa2g04547 320 CDD ARID_HMGB9-like 23 108 IPR045303 GO:0003677
Vifa2g04547 320 Pfam ARID/BRIGHT DNA binding domain 26 108 IPR001606 GO:0003677
Vifa2g04547 320 MobiDBLite consensus disorder prediction 216 239 - -
Vifa2g04547 320 SMART bright_3 22 113 IPR001606 GO:0003677
Vifa2g04547 320 SUPERFAMILY HMG-box 235 309 IPR036910 -
Vifa2g04547 320 SUPERFAMILY ARID-like 17 117 IPR036431 GO:0003677
Vifa2g04547 320 Gene3D - 14 117 IPR036431 GO:0003677
Vifa2g04547 320 MobiDBLite consensus disorder prediction 221 235 - -
Vifa2g04547 320 Pfam HMG (high mobility group) box 238 305 IPR009071 -
Vifa2g04547 320 Gene3D High mobility group box domain 222 320 IPR036910 -
Vifa2g04547 320 ProSiteProfiles ARID domain profile. 21 112 IPR001606 GO:0003677
Vifa2g04547 320 SMART ARID_2 18 108 - -
Vifa2g04547 320 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 238 305 IPR009071 -
Vifa2g04547 320 CDD HMG-box_AtHMGB9-like 238 304 - -
Vifa2g04547 320 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 312 - -
Vifa2g04547 320 SMART hmgende2 237 306 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04547 Vifa-Chr2 1337580543 1337582338 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04547 8 313 ARID Transcription Factor Family AT1G76110 62.379 1.20e-130 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa2g04547 ARID 1.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04547 - - gmx:100784746 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04547 2 1337580543 1337582338 Vifa2g04547 2 1337580543 1337582338 ECH