Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04545 ATGACTACCAAATCCGATTCCGTCGTTTACCTTCACGGTAACCTCGATTTGAAAATCGTCGAGGCTCGTTTTCTACCGAACATGGACATGTTCTCTGAGCGGTTTCGAAGATTCTTCTCCGCTTTCAATTCATGCAGAACTTCGACTTTTGGTAAAGGAAAGAATCACGAACCACATCATCATCATCATCCTAAAATTATAACCAGCGATCCTTACGTAACGGTTTGTCTTGCCGGAGCAACGGTGGCGCGTACGCGAGTTATTTCGAACTCGCAGTCGCCGAAATGGGAAGAGCATTTCAGGATTCCGTTGGCTCATCCTGTTTCTCAGGTTGAATTCTATGTGAAGGATAATGATATGTTTGGCGCTGATTTGATCGGAGTCGCAACCGTTTCGGCGACGAGGATTTTATCTGGTGATAGTATATGTGATTGGTTTCCGATTATAGGTTCTTTCGGTAAGCCGCCGAAGCCGGATTGCGCGGTTTTTCTTGAGATGAAATTCACGAGGTGTGATGATAATCCTCTGTATCGATCCGGTGTTTCGCTTGAGGCGGATAGGTTTAACGTTGAGGATTCGTATTTTCCGGTGAGGCATGGAGGATCAGTGACGCTGTATCAAGATGCGCATGTGCCGGATTCAATGTTGCCGGGGATTGAATTGGATGATGGTGTGGAGTTTCAGCAAGGGAAGTGCTGGGAAGATATCTGTCATGCGATCTTGGAAGCTCATCATTTGGTGTATATTGTCGGTTGGTCGATTTTTCATAAGGTGAAGCTTGTTAGGGAACCATCTAAACCCTTGCCTAGTGGTGGAAATTTGAATTTGGGGGAATTGCTCAAGTACAAATCTCAAGAAGGTTTGCGAGTTTTACTGTTGGTTTGGGATGATAAAACTTCACACAGTAAATTTTTCATTAACACGAATGGAATAATGCAAACTCATGATGAAGAAACTCGAAAATTTTTCAAGCATTCTTCAGTTACATGCGTGTTGTCACCAAGATATGCCAGCAGTAAGCTTAGCATTTTCAAGCAGCAGGTTGTTGGAACGCTTTTTACACACCATCAGAAATGTGTGATCGTTGATACCCAAGCACATGGAAATAATCGGAAGATAACTGCATTTATAGGTGGTCTAGATCTTTGTGATGGTCGGTATGATACACCTGAGCATAGAATTTGCCGTGATCTTGACACTGTTTATAAGGATGATTATCATAATCCCACATTTTCTGCAGGAACCAAGGGTCCAAGGCAACCATGGCATGATCTGCATTGTAAAATTGAAGGGCCTGCTGCATATGATATACTCACTAATTTTGAGCAGCGCTGGAAGAGAGCCACCAGATGGTCTGAGTTAGGTCAAAAATTAAAAAGAGTGTCGCACTGGCATGATGATTCTTTAATTAAGTTAGAACGCATCTCTTGGATTCTTAGTCCTTCTGAATCAATGCCAAATGATGATCCTGAATTATGGGTTTCAAAGGAAGATGACCCTGAAAATTGGCATGTTCAGGTTTTTCGATCCATAGATTCAGGCTCTTTGAAAGGATTTCCTAAAGATATACTTGAAGCCAGGGCTCAGAATCTTGTTTGTGCAAAAAATTTGGTCATAGACAAGAGTATTCAGACAGCTTACATACATGCCATTAGATCTGCCCAGCATTTTATTTATATCGAGAATCAATACTTTATTGGATCATCCTTTGCTTGGCCATCTTACAAAGAAGCAGGTGCTGATAACTTAATTCCTATGGAGTTGGCGCTGAAAATTGTCAGTAAAATCAGATCTCGAGAGAGGTTTACTGTTTATATTGTCATTCCAATGTGGCCGGAAGGTGTCCCTTCTTCTGTCACAGTGCAAGAGATTCTCTATTTTCAGGGACAAACTATGCAAATGATGTATGGAATCATAGCCCGGGAATTAAAATATATGAACCTTAACAATAGCCATCCACAAGATTACCTCAATTTTTACTGTCTTGGTAATCGAGAGAAGTTTACAACTGAAGATTCAAATCCAAAGAGTTCACATTCCGATGATGGCGACACGGTTTCAGCTTCACAAAAGTTTCAACGGTTTATGATTTATGTACATGCCAAGGGAATGGTTGTGGATGATGAGTATGTGATGGTTGGATCTGCCAATATCAACCAACGATCTTTGGGTGGATCAAGAGATACTGAGATAGCAATGGGTGCATATCAACCCCGCCATACATGGAACAAGAAAAAGGGGCACCCTCATGGGCAGGTATATGGGTATAGAATGTCCTTGTGGGCAGAGCACTTAGGGACCATACATGACTGCTTCAAGGAGCCTGAAAGTTTGGAATGTGTGAAGACTGTGAACGAGATTGCGGAACAAAACTGGAAGAAATTTACAGCTGATGATTTTAAGCCATTGGAAGGGCACATTATGAAATATCCCATCAAAGTGAATGCAGATGGGAAAGTAAGCCCTTTACCTGGATTTGAGTCTTTCCCAGACGTCGGCGGCAAGGTGCTTGGTTCCCGATCTACTCTTCCTGATGCTCTAACTACATAG 2550 0.4212 MTTKSDSVVYLHGNLDLKIVEARFLPNMDMFSERFRRFFSAFNSCRTSTFGKGKNHEPHHHHHPKIITSDPYVTVCLAGATVARTRVISNSQSPKWEEHFRIPLAHPVSQVEFYVKDNDMFGADLIGVATVSATRILSGDSICDWFPIIGSFGKPPKPDCAVFLEMKFTRCDDNPLYRSGVSLEADRFNVEDSYFPVRHGGSVTLYQDAHVPDSMLPGIELDDGVEFQQGKCWEDICHAILEAHHLVYIVGWSIFHKVKLVREPSKPLPSGGNLNLGELLKYKSQEGLRVLLLVWDDKTSHSKFFINTNGIMQTHDEETRKFFKHSSVTCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQAHGNNRKITAFIGGLDLCDGRYDTPEHRICRDLDTVYKDDYHNPTFSAGTKGPRQPWHDLHCKIEGPAAYDILTNFEQRWKRATRWSELGQKLKRVSHWHDDSLIKLERISWILSPSESMPNDDPELWVSKEDDPENWHVQVFRSIDSGSLKGFPKDILEARAQNLVCAKNLVIDKSIQTAYIHAIRSAQHFIYIENQYFIGSSFAWPSYKEAGADNLIPMELALKIVSKIRSRERFTVYIVIPMWPEGVPSSVTVQEILYFQGQTMQMMYGIIARELKYMNLNNSHPQDYLNFYCLGNREKFTTEDSNPKSSHSDDGDTVSASQKFQRFMIYVHAKGMVVDDEYVMVGSANINQRSLGGSRDTEIAMGAYQPRHTWNKKKGHPHGQVYGYRMSLWAEHLGTIHDCFKEPESLECVKTVNEIAEQNWKKFTADDFKPLEGHIMKYPIKVNADGKVSPLPGFESFPDVGGKVLGSRSTLPDALTT 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04545 849 SUPERFAMILY Phospholipase D/nuclease 540 781 - -
Vifa2g04545 849 CDD C2_plant_PLD 7 169 - -
Vifa2g04545 849 PIRSF PLD_plant 1 849 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vifa2g04545 849 ProSiteProfiles C2 domain profile. 1 146 IPR000008 -
Vifa2g04545 849 Pfam PLD-like domain 548 731 IPR025202 -
Vifa2g04545 849 PANTHER PHOSPHOLIPASE D 4 840 IPR015679 -
Vifa2g04545 849 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 695 722 IPR001736 GO:0003824
Vifa2g04545 849 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 11 169 IPR035892 -
Vifa2g04545 849 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 351 386 IPR001736 GO:0003824
Vifa2g04545 849 SMART C2_3c 14 145 IPR000008 -
Vifa2g04545 849 Gene3D Endonuclease Chain A 225 470 - -
Vifa2g04545 849 SMART pld_4 695 722 IPR001736 GO:0003824
Vifa2g04545 849 SMART pld_4 351 386 IPR001736 GO:0003824
Vifa2g04545 849 Pfam C2 domain 13 148 IPR000008 -
Vifa2g04545 849 Pfam Phospholipase D C terminal 770 839 IPR024632 -
Vifa2g04545 849 SUPERFAMILY Phospholipase D/nuclease 187 457 - -
Vifa2g04545 849 Gene3D Endonuclease Chain A 521 744 - -
Vifa2g04545 849 Pfam Phospholipase D Active site motif 352 386 IPR001736 GO:0003824
Vifa2g04545 849 FunFam Phospholipase D delta 223 467 - -
Vifa2g04545 849 Gene3D C2 domain 8 168 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04545 Vifa-Chr2 1336652043 1336658717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04545 5 668 Phospholipase D Gene Family (Wang group) AT4G35790 67.010 0.0 952
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04545 K01115 - gmx:100795859 1484.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04545 2 1336652043 1336658717 Vifa2g04545 2 1336652043 1336658717 ECH