Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04523 ATGATGAAGGTTCCAATCATAGCTTTTGGAGATTCAATCCTGGATACTGGAAATAACAACAACATCACAACTATAGTCAAATGCAATTTCCTTCCTTACGGTCAAGATTTTGAAGGAGGGACTCCAACAGGTCGATTTTGCAATGGCAAAAATCCCTCAGACTTGATAGTTGAAGAATTAGGTATTAAGGAGCTTTTACCAGCTTATTTGGATCCAAATCTAAAGCCAAGTGACCTTCCTACTGGTGTATCCTTTGCTTCTGGTGCTTCTGGTTATGATCCTTTAACTTCTAAAATTGTGTCGGTGATTTCAATGTCTAAACAACTAGAAATGTTCAAAGCATATATAGAGAGGCTTAAAGGTGTGGTTGGAGAGAAAAGAAAAAACTTCATCATAGCAAACACACTTTTCATTGTAGTAGCTGGAAGTGATGATCTTGCAAACACTTATTTTACTATTCGCACCCCCAGGAAACTTCAATATGATGTTCCTGCTTATACTGATCTTATGGTTAAAGAAGCTTCCAAGTTCGTTAAGGGAATATATAAACTTGGAGCAAGAAGAATTGCAGTGTTCAGTGCACCACCTATTGGATCCATACCAGCACAGAGGACACTAGGTGGAGGTGTATTTAGAAATATCAATGAGAAATACAATGAAGCAGCCAAGTTATTTAACTCCAAACTCTCTAAGGAAATGGATTATCTTCGTTCTAGTTTGCATAATAGTAGGGTTGTTTATATTGACATATACGAACCCCTACTTGATATCATTCTAAATCCTCAAAAATATGGGTATAAAATTGCAGATAAAGGTTGTTGTGGAACAGGAAAACTAGAAGCATCAATTTTATGTAACCCTTTGACTCCAACTTGTGCTGATAATTCAGAATATGTGTTTTGGGACAGCTATCATCCTACAGAAAATGTATACAGAAAGCTTCTGGCTGAAGTTCTTCCAAAATATGTGGATCGCTTAACATGA 984 0.3669 MMKVPIIAFGDSILDTGNNNNITTIVKCNFLPYGQDFEGGTPTGRFCNGKNPSDLIVEELGIKELLPAYLDPNLKPSDLPTGVSFASGASGYDPLTSKIVSVISMSKQLEMFKAYIERLKGVVGEKRKNFIIANTLFIVVAGSDDLANTYFTIRTPRKLQYDVPAYTDLMVKEASKFVKGIYKLGARRIAVFSAPPIGSIPAQRTLGGGVFRNINEKYNEAAKLFNSKLSKEMDYLRSSLHNSRVVYIDIYEPLLDIILNPQKYGYKIADKGCCGTGKLEASILCNPLTPTCADNSEYVFWDSYHPTENVYRKLLAEVLPKYVDRLT 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04523 327 Pfam GDSL-like Lipase/Acylhydrolase 6 314 IPR001087 GO:0016788
Vifa2g04523 327 CDD SGNH_plant_lipase_like 6 322 IPR035669 -
Vifa2g04523 327 SUPERFAMILY SGNH hydrolase 135 320 - -
Vifa2g04523 327 Gene3D SGNH hydrolase 5 322 IPR036514 -
Vifa2g04523 327 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 6 17 IPR008265 GO:0006629|GO:0016298
Vifa2g04523 327 PANTHER GDSL ESTERASE/LIPASE EXL3 6 315 - -
Vifa2g04523 327 FunFam GDSL esterase/lipase APG 2 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04523 Vifa-Chr2 1331460994 1331462424 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04523 6 314 Pollen Coat Proteome AT1G75910 38.585 6.38e-69 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04523 - - gmx:100777710 480.715