Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04521 ATGGTCAAGGGTAGACAGGGAGAACGCATTAGGCTTTATGTCAGGGGTACAGTTCTTGGATACAAAAGGTCAAAGTCAAATCAATACCCAAACACCTCTCTTGTTCAGATCGAGGGAGTAAACATAAAGGAAGAGGTTGCATGGTATGCTGGGAAACGGTTGGCATACATTTACAAGGCCAAGGTTAAAAGGGATGGTAGCCACTATAGGTGTATCTGGGGAAAGGTTACTAGACCTCATGGTAACAGTGGGGTAGTCCGTGCAAAGTTCACTTCAAATTTGCCACCAAAATCCACTACTACTGTTACGGAGAAAAGAGAAGACGAAGCAACAAGCAAACCATGCAGCAGAGAACCAACAACGACGACTCACAAGTGGAATCGATCTCCATCAAGAAAGCGTCCTGTCATAGCTGATGCAAACGTCAGCGGTGGAAATGAGAGAAGGATTAAATCACCGGCTAGAAGACCGTCCCCGTCGCCAGAGAAGAAAATGAAGAACGGGTCAAGGTTAGTTCGTGGAAGAGAATCTGGTTCTGTTGCAAACCGTAAAGTCAATGCAGGTTCAACCGGTGTTCGCCGTGACTCCGGTGAGGGTTCCGGCAGGAGGTCGAGGTCTCCTTCGTGTTCTCGTACAGTTGGAGTGTCGAGTAAAATAGGTGTCGGAGTTGGTCGGAACCAAGCTCCAGCGAAGAAGAGTGAGAGTGAAGAGGTTGGAGAGATAAACGACATCGTTTGTAATGTAACAGAGAAGAAGAGTGAGAGTGAAGAATGTGAAGAGAAAAATGACATCGTTTCGCAGGTAGAGTCAATTGAAAACCCTCATGTTTCGATGAAGTGTTTTATTTTTCTGTAG 855 0.4596 MVKGRQGERIRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNIKEEVAWYAGKRLAYIYKAKVKRDGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSTTTVTEKREDEATSKPCSREPTTTTHKWNRSPSRKRPVIADANVSGGNERRIKSPARRPSPSPEKKMKNGSRLVRGRESGSVANRKVNAGSTGVRRDSGEGSGRRSRSPSCSRTVGVSSKIGVGVGRNQAPAKKSESEEVGEINDIVCNVTEKKSESEECEEKNDIVSQVESIENPHVSMKCFIFL 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04521 284 Gene3D translation elongation factor selb, chain A, domain 4 2 104 IPR038661 -
Vifa2g04521 284 MobiDBLite consensus disorder prediction 149 171 - -
Vifa2g04521 284 PANTHER 60S RIBOSOMAL PROTEIN L35A 2 100 IPR001780 GO:0003735|GO:0005840|GO:0006412
Vifa2g04521 284 MobiDBLite consensus disorder prediction 82 238 - -
Vifa2g04521 284 Hamap 50S ribosomal protein L35Ae [rpl35ae]. 14 106 IPR001780 GO:0003735|GO:0005840|GO:0006412
Vifa2g04521 284 Pfam Ribosomal protein L35Ae 12 100 IPR001780 GO:0003735|GO:0005840|GO:0006412
Vifa2g04521 284 SUPERFAMILY Translation proteins 12 99 IPR009000 -
Vifa2g04521 284 ProSitePatterns Ribosomal protein L35Ae signature. 74 95 IPR018266 GO:0003735|GO:0005840|GO:0006412
Vifa2g04521 284 MobiDBLite consensus disorder prediction 86 100 - -
Vifa2g04521 284 FunFam 60S ribosomal protein L35a 7 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04521 Vifa-Chr2 1330995758 1330996612 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04521 1 99 Cytoplasmic Ribosomal Protein Gene Family AT1G74270 88.889 2.19e-62 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04521 K02917 - tpra:123923174 224.172