Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04511 ATGGCTGTTCAATCAAAATATCGTCTTATTACTTACTCACCAGAGATTATAGATGGAAAACCTATATTTGTTTCGTCGAATTGTCTTCCGGTGAAGGTGTCGAAATTCGAGCCGGCTGGTCATTCTTTTCACGCTGTAGCGCTTAAACTTCGCGGGGTTAAGAAAGAAGAAGAAAACAAAGATGCTGATAGTAAGAAAGTTGTTGGGGATAAGGATAAGGATCAGGCTTATTTGCCGTCTGATTCTTATAGTAGTAAGAGTAAGAAGAAATCGGGGGATGGCGAGAAGCAGCAGCAGGATCATTATGCTTTGTTGGGTTTGAGTCATCTTAGGTATCTTGCTAATGAGGATCAAATTCGGAAAAGTTATCGCGAAACTGCGTTGAGGTTTCATCCGGATAAACAGGCTTCTTTGCTTCTTTCGGAGGAGACTGAAGCTGGGAAGCAGGCGAAGAAGGAGGAGATTGAGACTCATTTTAAGGCGATTCAGGAGGCGTATGAGGTGTTGGTTGATCCTGTTAAGAGGAGGATTTATGATTCTACGGATGAGTTTGATGATGAGATTCCGACTGATTGTGCTCCGCAGGATTTTTATAAGGTGTTTGGTCCGGCTTTTATGAGGAATGGACGGTGGTCAGTTAATCAGCCGATTCCGTCTCTGGGTGATGATAAGACTTCGATAAAGGAGGTTGATGGTTTCTATAATTTTTGGTATTCGTTTAAAAGTTGGAGGGAGTTTCCTCAGTCGGATGAGTTTGATCTTGAGCAAGCTGATTCTCGAGATCATAGGAGGTGGATGGAGAGGCAGAATGCAAAACTGTCGGAGAAAGCTAGGAAGGAAGAGTATGCACGGATCCGTACTCTTGTTGATAATGCTTATAAGAGGGATCCTAGAATAGTGAGAAGAAAGGAAGAGGCAAAAGCGGAGAAGAAAAGGAAAAAGGAGTCTAAGTACTTGGCAAAGAAGTTGGAGGAGGAAGAAGCTGCTAGAATTGCAGAAGAGGAGAGACTACGGAAAGCTGAGGAAGATAAAAAAGCTGCTGAAGCTGCTTCGGCACAGAAGAAAGTGAAGGAGAAGGAGAAAAAGCTCTTGCGGAAGGAGCGAACACGTCTTCGAAATCTTTCAGGACCTATCTCGTCAAAACATGTACTTGATATTTCTGAAGATGATGTTGAAAAGATTTGCATGTCATTTGATATTGAACGGTTGAGGGGTTTGTGCGAGAAAATGGAAGGCAAAGAGGCTTCAGGGCAGGCAGAAGCTCTAAGAGATGCACTTAGTAACAAAGATAGTTGCAAGAAAGATGTGGTTGATGAGAAAAGTACTCAACAAAATGGCTCTGTCAAGGCTAATGGAAATCTTAGTTCTCTAGCTGGCTACACCGAGAAAAAGGAGAAACCTTGGACTAAAGAAGAGATTGAGCTTTTGAGGAAGGGAATTCAAAAGTTTCCCAAAGGAACTTCAAAGAGGTGGGAGGTTGTTTCAGAATATATCGGCACTGGAAGATCTGTTGAAGAAATAATGAAAGCAACTAAAACCGTTCTCCTCCAGAAGCCAGATACAGCCAAAGCTTTTGACACATTTCTTGAGAAGAGGAAGCCTGCTGCACAATCAATTGCTTCTCCACTCACAACCAGAGAAGAATTGGAAGGGGTATCTATACCAGCAACAACACCTGAAAACAGTACTGGCTCAGCAACACCGATTCCAGCAGCAACACCGATTCCAACAGCAACACCAACTACAACAGCAAATAACATCAGCCCGGAAGACTCTCAAGAAGTTTCTGAATCTGAGGTGTGGTCTGCCGTGCAGGAAAGAGCACTAGTTCAAGCTTTAAAAACCTTTCCAAAGGAAGCTAATCAGAGATGGGAGCGAGTAGCTGCTGCTGTACCTGGGAAAACTGTGAATCAGTGCAAGAAAAAATTTGCCTTGATGAAGGAAAATTTCAGGAACAAGAAAACTGCAGTTTGA 1974 0.4291 MAVQSKYRLITYSPEIIDGKPIFVSSNCLPVKVSKFEPAGHSFHAVALKLRGVKKEEENKDADSKKVVGDKDKDQAYLPSDSYSSKSKKKSGDGEKQQQDHYALLGLSHLRYLANEDQIRKSYRETALRFHPDKQASLLLSEETEAGKQAKKEEIETHFKAIQEAYEVLVDPVKRRIYDSTDEFDDEIPTDCAPQDFYKVFGPAFMRNGRWSVNQPIPSLGDDKTSIKEVDGFYNFWYSFKSWREFPQSDEFDLEQADSRDHRRWMERQNAKLSEKARKEEYARIRTLVDNAYKRDPRIVRRKEEAKAEKKRKKESKYLAKKLEEEEAARIAEEERLRKAEEDKKAAEAASAQKKVKEKEKKLLRKERTRLRNLSGPISSKHVLDISEDDVEKICMSFDIERLRGLCEKMEGKEASGQAEALRDALSNKDSCKKDVVDEKSTQQNGSVKANGNLSSLAGYTEKKEKPWTKEEIELLRKGIQKFPKGTSKRWEVVSEYIGTGRSVEEIMKATKTVLLQKPDTAKAFDTFLEKRKPAAQSIASPLTTREELEGVSIPATTPENSTGSATPIPAATPIPTATPTTTANNISPEDSQEVSESEVWSAVQERALVQALKTFPKEANQRWERVAAAVPGKTVNQCKKKFALMKENFRNKKTAV 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04511 657 CDD SANT 601 647 IPR001005 -
Vifa2g04511 657 MobiDBLite consensus disorder prediction 433 465 - -
Vifa2g04511 657 CDD SANT 467 509 IPR001005 -
Vifa2g04511 657 MobiDBLite consensus disorder prediction 441 458 - -
Vifa2g04511 657 MobiDBLite consensus disorder prediction 555 599 - -
Vifa2g04511 657 MobiDBLite consensus disorder prediction 54 77 - -
Vifa2g04511 657 CDD DnaJ 100 171 IPR001623 -
Vifa2g04511 657 MobiDBLite consensus disorder prediction 54 97 - -
Vifa2g04511 657 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 656 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Vifa2g04511 657 SUPERFAMILY Homeodomain-like 466 510 IPR009057 -
Vifa2g04511 657 MobiDBLite consensus disorder prediction 338 364 - -
Vifa2g04511 657 Gene3D - 600 649 - -
Vifa2g04511 657 Pfam Myb-like DNA-binding domain 466 507 IPR001005 -
Vifa2g04511 657 Pfam Myb-like DNA-binding domain 600 643 IPR001005 -
Vifa2g04511 657 Gene3D - 461 518 - -
Vifa2g04511 657 ProSiteProfiles SANT domain profile. 596 651 IPR017884 -
Vifa2g04511 657 SMART sant 464 517 IPR001005 -
Vifa2g04511 657 SMART sant 597 649 IPR001005 -
Vifa2g04511 657 Pfam DnaJ domain 100 179 IPR001623 -
Vifa2g04511 657 PRINTS DnaJ domain signature 105 123 IPR001623 -
Vifa2g04511 657 PRINTS DnaJ domain signature 123 138 IPR001623 -
Vifa2g04511 657 PRINTS DnaJ domain signature 154 174 IPR001623 -
Vifa2g04511 657 SMART dnaj_3 99 174 IPR001623 -
Vifa2g04511 657 Coils Coil 306 374 - -
Vifa2g04511 657 FunFam Myb family transcription factor 595 655 - -
Vifa2g04511 657 ProSitePatterns Nt-dnaJ domain signature. 159 178 IPR018253 -
Vifa2g04511 657 ProSiteProfiles Myb-like domain profile. 601 643 IPR001005 -
Vifa2g04511 657 SUPERFAMILY Homeodomain-like 599 653 IPR009057 -
Vifa2g04511 657 SUPERFAMILY Chaperone J-domain 98 205 IPR036869 -
Vifa2g04511 657 Gene3D DnaJ domain 83 200 IPR036869 -
Vifa2g04511 657 ProSiteProfiles dnaJ domain profile. 100 182 IPR001623 -
Vifa2g04511 657 ProSiteProfiles Myb-like domain profile. 460 515 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04511 Vifa-Chr2 1328468819 1328470792 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04511 101 300 C2H2 Transcription Factor Family AT1G74250 29.707 7.87e-18 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa2g04511 DnaJ 2.9e-17 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04511 K09522 - gmx:100814414 824.313