Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04493 ATGTCGACACCAGGAGAAGATCAAATTCACCATTTCTCACAATTTAAATTCGATTTATTGCATTCCCCTAACCCTTCTCATCTCAATCCTTTCACTCCTATGCTTCCCTTGAGTCAAAGAAATGGAATCAATAACGTCAACTTGCATGCTAGTAATGTTGAAGCGTTTCCAAGTCAGAGCAATGCGGTTAATCTTCCTCCTCTTCTTCAGATCGAAACCAATCAAAGAGGGAAGCATAATGGTAAATCAAAAGTTTCAAGAAATTCAAAATCTGCAGCGGCTCAGATGACAAATGGAGAATCACTGAATGCATCGGCCGTAAACAACTGCCGTTATGACAGTTCCTTAGGGTTGTTAACCAAGAAATTTGTCAGCTTGATCCAAAATGCTAAGGATGGTACCCTTGATCTAAATAAAACTGCTGAGGTTTTAGAGGTTCAAAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGAATAGGATTGATAGAGAAAACATCAAAGAACCATATACGGTGGAAGGGATGCGATGGAATTGGGCCTCGAGAATTAGAGGATCAAGTGAATGCTCTAAAGGCTGAAGTTGAAAGTTTATATGTTGAGGAATGCAAACTCGAGGAGTGTATAAGCGAAAGGAAGGAGCTTCTAAGAAACCTGGAAGAAGGTGAAAACACCGGAAAGTACCTTTTTTTAACCAAGGAAGATATCCTTACCCTTCCATGCTTCCAGAATAAGCAACTTATTGCAGTCAAGGCTCCAAAAGCTAGTTTCATTGAGGTCCCCGATCCAGATGAGGAATTAGGCTTCCACCAAAGGCAGTACAGAATGATTATTAGAAGTGCAACTGGACCGATAAATCTGTACCTCTTGAACAAGCACGAGCACAAGTTAGAGGACGTGAGTGTAGAACACGCAGAGTTAATGGACCCATCGTGGAGTAGCAACCACTGCAGAACGGAGGGGGTGGAATTATTAGAAAGCCAAAGTTGTCAGAAAAACCCTTCTGGAAGTTTAAGTTCGCATGGCTCGGAGGCTTTTGGAATTCAACAAATTACTCCTACAGATTTGGATGTTGATGGTGACTATTGGTTTCAATCAGATCCTGAAGTTGGCCTAACACAATTGTGGGGGTGA 1137 0.4116 MSTPGEDQIHHFSQFKFDLLHSPNPSHLNPFTPMLPLSQRNGINNVNLHASNVEAFPSQSNAVNLPPLLQIETNQRGKHNGKSKVSRNSKSAAAQMTNGESLNASAVNNCRYDSSLGLLTKKFVSLIQNAKDGTLDLNKTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGCDGIGPRELEDQVNALKAEVESLYVEECKLEECISERKELLRNLEEGENTGKYLFLTKEDILTLPCFQNKQLIAVKAPKASFIEVPDPDEELGFHQRQYRMIIRSATGPINLYLLNKHEHKLEDVSVEHAELMDPSWSSNHCRTEGVELLESQSCQKNPSGSLSSHGSEAFGIQQITPTDLDVDGDYWFQSDPEVGLTQLWG 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04493 378 SMART E2F_TDP_2 111 176 IPR003316 GO:0005667|GO:0006355
Vifa2g04493 378 FunFam E2F transcription factor 1 105 178 - -
Vifa2g04493 378 PANTHER TRANSCRIPTION FACTOR E2F 71 377 IPR015633 GO:0000978|GO:0006357
Vifa2g04493 378 SUPERFAMILY E2F-DP heterodimerization region 187 293 IPR037241 -
Vifa2g04493 378 SUPERFAMILY "Winged helix" DNA-binding domain 111 174 IPR036390 -
Vifa2g04493 378 Coils Coil 206 226 - -
Vifa2g04493 378 Gene3D - 106 178 IPR036388 -
Vifa2g04493 378 CDD E2F_DD 187 294 IPR032198 GO:0046983
Vifa2g04493 378 Gene3D - 183 294 - -
Vifa2g04493 378 Pfam E2F transcription factor CC-MB domain 192 291 IPR032198 GO:0046983
Vifa2g04493 378 Pfam E2F/DP family winged-helix DNA-binding domain 113 176 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04493 Vifa-Chr2 1323017843 1323021491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04493 2 377 E2F-DP Transcription Factor Family AT1G47870 44.125 2.55e-98 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vifa2g04493 E2F_CC-MB 7.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04493 K06620 - gmx:100797301 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04493 2 1323017843 1323021491 Vifa2g04493 2 1323017843 1323021491 ECH