LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g04469	ATGGCTCGTGGAAAGATCCAGATCAAGAGAATAGAGAACACCACAAACCGACAGGTTACTTATTCGAAACGAAGGAATGGTCTTTTCAAGAAGGCTAATGAGCTTACTGTTCTTTGTGATGCTAAGGTTTCTATTATTATGTTTTCCAGCACCGGCAAGCTTCATGAGTATATTAGTCCTTCTGTCTCAACAAAGCAGTTTTTCGATCAGTATCAGATGACTGTTGGAATTGATCTATGGAACTCTCATTATGAGAATATGCAAGAGAACTTGAAGAAACTGAAAGATGTTAATAGGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGAGATTGTCTGAACGATCTGAACATGGAGGAGCTGAGACTGCTTGAGGAAGAAATGGACAAGGCTGCTAAGGCTATTCGTGAGCGTAAGTATAAGGTGATAACGAATCAGATTGACACTCAAAGGAAGAAGTTTAACAACGAGAGAGAAGTGCACAACAGACTCCTGCGTGACTTGGATGCAAGAGCAGAAGATGGACGCTTTGAAATGATGGAAAATGGAGGAGCAGATTATGAGTCTGTCATTGGTTTCTCAAATTTAGGTCCTCGCATGTTTGCTTTGACCTTACAGCCTACTCATCCTGCTAACAACAACCCTCATAATACTGGACAACAACCTGCTTCGGATCTCACCACTTACCCTTTACTTTTCTAG	702	0.416	MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSVSTKQFFDQYQMTVGIDLWNSHYENMQENLKKLKDVNRNLRKEIRQRMGDCLNDLNMEELRLLEEEMDKAAKAIRERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAEDGRFEMMENGGADYESVIGFSNLGPRMFALTLQPTHPANNNPHNTGQQPASDLTTYPLLF	233

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g04469	233	ProSiteProfiles	K-box domain profile.	84	174	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Vifa2g04469	233	MobiDBLite	consensus disorder prediction	206	227	-	-
	Vifa2g04469	233	Coils	Coil	77	107	-	-
	Vifa2g04469	233	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Vifa2g04469	233	Pfam	K-box region	82	167	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Vifa2g04469	233	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Vifa2g04469	233	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Vifa2g04469	233	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Vifa2g04469	233	Coils	Coil	114	138	-	-
	Vifa2g04469	233	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Vifa2g04469	233	Coils	Coil	151	171	-	-
	Vifa2g04469	233	CDD	MADS_MEF2_like	2	80	IPR033896	GO:0000977\|GO:0045944
	Vifa2g04469	233	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Vifa2g04469	233	MobiDBLite	consensus disorder prediction	206	229	-	-
	Vifa2g04469	233	Gene3D	-	13	81	IPR036879	GO:0003677\|GO:0046983
	Vifa2g04469	233	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	207	-	-
	Vifa2g04469	233	SUPERFAMILY	SRF-like	3	95	IPR036879	GO:0003677\|GO:0046983
	Vifa2g04469	233	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g04469	Vifa-Chr2	1310563516	1310571519	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g04469	1	232	MADS-box Gene Family	AT3G54340	54.310	5.89e-89	260

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Vifa2g04469		K-box	3.1e-19	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g04469	K09264		-	gmx:547720	382.874

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa2g04469	2	1310563516	1310571519	Vifa2g04469	2	1310563516	1310571519	ECH