Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04462 ATGCCTCTCCTCATCCACCCATTCCCCATTAATTTGAATCATGGCTTTTCCAAATCACTTACATTCAGGGACAGACTAACTCGTGGGAAGAGTAGCTATGTCATTCGTTCCCAAAAGAATCGTGACGATGATGGTGATGTCGATGGATTTTACATGAGGAAAAGCGTTGAGCTCTCCAGAAAGGCTTTGGGGTGTACAAGCCCCAATCCTTTAGTTGGATATGTTATTGTCAAAGATGGTCAAATTGTTGGCCAAGGTTTTCATCCTAAACCTGGTCAACCTCATGCTGAGGTGTTTGCTCTGAGAGATGCTGCTGATTTGGACGAGAATGCAACGGCGTATGTCACTTTAGAACCTTGTAATCATTTTGGGAGGACTCCGCCTTGCACTGAAGCTCTCATTAAAGCTAGACTTAAAAAGGTTGTTGTTGGGATGGTGGATCCAAATCCTATCGTGGCTTCCAAAGGGTTAGATAGATTGAGAGGTGCTGGAATTGAAGTTGTTGTTGGTGTTGAGGAAGAATTGTGTAAGGGCCTCAATGAGGGTTATATTCATCACATGTTGACCCAGAAGCCTCTGCTTACTTTGAGGTATTCTCTTTCTGTCAACGGAAACTTGTTGGACTCACTTGGGAATGGAGTAACTCACTCTGGTGGATACTATTCTAGGCTATTACAAGAATATGATGCAGTTATATTATCCTCTTCTTTATTCCGTGAAACTTTATCGGTCGACTCCATACCTTCATCTCAAGAACCTGGAGCCAATCAACCCATTCGGTTTATAATGCATAGAGATTCTGGTTCTGGTTCTTCAAATCAAATTCCATTTATAATCGATAACGTTACTGATAAAATGATAATCTTTACAGATTGTATAACAACAGCTCCCGAGGAGACTCAACAAGGAATTAAAACTGTATCTGTGGATCAAATAAATCTTGATGTGATCTTGGATTATTGTAATCGTCAAGGATTGTGCAGTGTTCTATTAGATATGAGAGGGAATTTCAGTGAATATCAAGAGCTTGTTAAAGAGGGTATTAGGAAGAAAGGTGACGATGAAGCCATCTCCGAACTCGACCACGAAATCCGCACCAGGATTCTCCGTGAGAAGTCTAACACTGACAACACCCTTGCTGCCGCTGAACAAAAGGTCTCTGAATTGGAGGCTCAATTGGAGGGATTGAGGTATGCTCCTTCTCAGAAGGATTTACTCGACAAAGAGAAGGAAATGCTTCAAGGCGATGTCATTAAGTTTCACAAGATTATTGACGAGTTTGGGTTGCGGATTGAGTCGAAAGAGAGGGATTTGAGGCCAGAGAATAAGCTTGGAGATGATGAAACGTGGGATAGGGCTGAAAGTGCTCTCAAGGAGGCTTTGGATGAGTGTGGCAAAGGGAATGTGTTTGTTAAGAACTTAGCGGAATCGATAGATAATGTGGGACTGCATGATTTATTTCAAGAATATGGGAATATTTTGTCTAGCAAAATTGTCATCTCTGAAGATGGGAAGAGCAAAGGGTTTGGTTATATACAGTTTGGTTCAGAGGAGTCTGCAAATGATGCTATCCAGAAAATGAATGGCTCTACTGTGAGAGATAAGCAGATATATGTTGGGAAATTTATCAGAAAAAGTGAGCGCTCTTTGCCTGAACCTGATGCCAAATATACAAACTTGTACGTTAAGAATTTGGACCCAGATATTACCGAAGCACTTCTTAAAGAACAGTTCTCATCTTTTGGAAAAATTCTTATCTTGGCTATTACGAGCAACATAAGCAATGAATGGATCACAATTTGGTTCAAAGAACCTGGATCAAACATTTATGTGAAGAACATTGATGATAGTGTTAGTGACGAAGAACTAAAGAGTCAGTTTAGTGCTTGTGGCACAATAACTTCTGCAAAAGTTATGCGAGATGACAAAGGAAAAAGCAAAGGCTTTGGGTTTGTCTGTTTCTCTACCCTGGATGAGGCTGTTAAGGCTGTGAACAGTTTTCATGGACGCATGTTTCACGGAAAACCACTGTATGTTGCTTTTGCTCAGAGGAAAGATGTTAGGCAAAGCCTATTGCAGCTCCAGCATTCGCACTGGTGTTGTTTATCATCACCCTAA 2118 0.4103 MPLLIHPFPINLNHGFSKSLTFRDRLTRGKSSYVIRSQKNRDDDGDVDGFYMRKSVELSRKALGCTSPNPLVGYVIVKDGQIVGQGFHPKPGQPHAEVFALRDAADLDENATAYVTLEPCNHFGRTPPCTEALIKARLKKVVVGMVDPNPIVASKGLDRLRGAGIEVVVGVEEELCKGLNEGYIHHMLTQKPLLTLRYSLSVNGNLLDSLGNGVTHSGGYYSRLLQEYDAVILSSSLFRETLSVDSIPSSQEPGANQPIRFIMHRDSGSGSSNQIPFIIDNVTDKMIIFTDCITTAPEETQQGIKTVSVDQINLDVILDYCNRQGLCSVLLDMRGNFSEYQELVKEGIRKKGDDEAISELDHEIRTRILREKSNTDNTLAAAEQKVSELEAQLEGLRYAPSQKDLLDKEKEMLQGDVIKFHKIIDEFGLRIESKERDLRPENKLGDDETWDRAESALKEALDECGKGNVFVKNLAESIDNVGLHDLFQEYGNILSSKIVISEDGKSKGFGYIQFGSEESANDAIQKMNGSTVRDKQIYVGKFIRKSERSLPEPDAKYTNLYVKNLDPDITEALLKEQFSSFGKILILAITSNISNEWITIWFKEPGSNIYVKNIDDSVSDEELKSQFSACGTITSAKVMRDDKGKSKGFGFVCFSTLDEAVKAVNSFHGRMFHGKPLYVAFAQRKDVRQSLLQLQHSHWCCLSSP 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04462 705 Gene3D - 552 594 IPR012677 -
Vifa2g04462 705 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 467 544 IPR000504 GO:0003723
Vifa2g04462 705 SUPERFAMILY RNA-binding domain, RBD 604 691 IPR035979 GO:0003676
Vifa2g04462 705 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 95 133 IPR016192 GO:0008270|GO:0016787
Vifa2g04462 705 Gene3D Dihydrofolate Reductase, subunit A 187 337 IPR024072 -
Vifa2g04462 705 Coils Coil 372 399 - -
Vifa2g04462 705 PANTHER RNA BINDING PROTEIN 606 685 - -
Vifa2g04462 705 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 609 677 IPR000504 GO:0003723
Vifa2g04462 705 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 560 591 IPR000504 GO:0003723
Vifa2g04462 705 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 469 537 IPR000504 GO:0003723
Vifa2g04462 705 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 50 145 IPR002125 -
Vifa2g04462 705 SUPERFAMILY RNA-binding domain, RBD 468 592 IPR035979 GO:0003676
Vifa2g04462 705 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 46 168 IPR002125 -
Vifa2g04462 705 Gene3D Cytidine Deaminase, domain 2 37 186 - -
Vifa2g04462 705 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 607 684 IPR000504 GO:0003723
Vifa2g04462 705 SUPERFAMILY Cytidine deaminase-like 48 187 IPR016193 GO:0003824
Vifa2g04462 705 CDD RRM4_I_PABPs 606 684 - -
Vifa2g04462 705 SMART rrm2_1 468 540 IPR003954 GO:0003676
Vifa2g04462 705 SMART rrm2_1 608 680 IPR003954 GO:0003676
Vifa2g04462 705 CDD Riboflavin_deaminase-reductase 52 164 - -
Vifa2g04462 705 SMART rrm1_1 468 540 IPR000504 GO:0003723
Vifa2g04462 705 SMART rrm1_1 608 680 IPR000504 GO:0003723
Vifa2g04462 705 FunFam Polyadenylate-binding protein 468 548 - -
Vifa2g04462 705 Gene3D - 425 549 IPR012677 -
Vifa2g04462 705 Gene3D - 601 692 IPR012677 -
Vifa2g04462 705 FunFam Riboflavin biosynthesis protein RibD 46 185 - -
Vifa2g04462 705 NCBIfam bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD 52 338 IPR004794 GO:0008835|GO:0009231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04462 Vifa-Chr2 1308208649 1308212598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04462 465 695 Eukaryotic Initiation Factors Gene Family AT2G36660 46.316 1.19e-73 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04462 K11752 - gmx:100786393 468.003