Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04460 ATGGAAAATGAACATTCTTCTTCTTCCACAATGGATATGCTACGTTCTGAGCCTATGCAACTTGCTCAATTGATCATTCCAATTGAATCAGCTCAACGAACCATCTCTTACCTCGGCGATCTTGGTCTTTTTCAATTCAAAGATCTTAACGAAGATAAAAGCCCATTCCAACGAACTTATGCATCTCAGGTTAAAAGATGCGGAGAAATGACACGTACAATGCGGTTATTTAAGGAACAAATGACGAAGACTGGTATATCTCCGTCAACACGATCAACACCAAACCCTGGTATTGATTTAGAAAAATTGGAGACTAAACTGGCAGAACTTGAAGCTGATCTACTCGAGATTAATTCAAACAATGAGAAGTTGCAACATTCTTATAATGAGCTTTTAGAGTATAAGCTTGTTCTAGAGAAGGTCGGAGAGTTTTTTCCTTCGGCGCAAAATAGCGCTGTAGTTCGCCAAAGAGAACTTGGAGTTCAACCAATTGTTGAAGGGTCTATTGACAGCCCATTATTGATCGAACAAGAGAGAACAGCATATCTAGTAAATCAGATTAAACTCGGGTTTATATGTGGTCTTGTTAATAGAGAAAAATCGATTCCATTCGAAAGAATATTATTCCGTGCTACTAGAGGAAATGTGTTTCTGAAACAAGCTATGGTTGAAGAATATGTTGTGGATCCTTTGTCAAGAGAGAAGGTTCATAAAAATGTGTTTGTTATATTTTATTCTGGAGAGAGAATAAAAAGTAAAACTACAAAAATTTGTGATGCTTTTGGAGCAAACCGTTATCCTTTTTCGGATGATTTGAGTAAACAATTTCAGACTATTACAGAGGTGTCAGGAAGACTTGCAGAATTAAAGACAACTATAGATATGGGTTTGCTTCACCGGAGCAATTTGTTGCAGACAGTTGGATATGAATTTGAACAATGGAACCTTTTGTTGAAGAAGGAAAAATCCATTTATCACATTCTAAATATGCTAAGCATTAATGTGACAAAGAAATGTCTCCTTGCAGAAGGATGGTGTCCTCTTTCTGCAACAAGTCAGATTCAGAAAGTATTGTTGCAGGCAACTACAGACTGTAGCTCTCAAGTTGGGGCAATATTTCAAGTTTTACAAACAAAGGAGTTACCTCCCACATATTTTTTCACAAATAAGTTTACTTCTTCTTTTCAAGAAATCGTAGATGCATACGGAATTGCCAAATATCAAGAAGCAAATCCTGGTGTATACACAATCATTACATTTCCATTCCTTTTTGCTGTAATGTTTGGTGATTGGGGTCATGGCATATGCTTATTACTTGCAACTTTGTATTTCATAATAAACGAGAAAAGGTTTTCTTCTCAGAAACTTGGAGACATATTAGAAATGGTTTTTGGTGGAAGATATATTATTTTGTTGATGTCACTCTTCTCAATTTACACCGGATTTATATACAATGAGTTCTTCTCCGTTCCCTTCGAACTTTTCGGACCAACGGCCTATGGATGTCGTGATCCTTCATGCAGGGATGCTACTACAATAGGTTTGATAAAAGTGCGTGACACTTATCCATTTGGTGTGGATCCTAAATGGCATGGCAGTCGTAGCGAGCTTCCATTTCTTAACTCTCTGAAAATGAAGATGTCGATTCTACTAGGAGTATCTCAGATGAATCTCGGAATCATATTGAGTTACTATAACGCAAAATATTTTGAAAACAACATAAATATATGGCACCAATTTGTTCCACAGATATTATTCTTGAATAGCCTATTTGGATACCTGTCACTCCTCATAATTGTTAAATGGTGCACTGGATCTCAGGCTGACCTATATCATGTGATGATATACATGTTCCTAAGTCCAACAGATGATTTGGGTGAAAACCAACTCTTTACTGGCCAAAAGTTTCTTCAAATTATGTTACTACTTTTGGCACTTGTGGCTGTACCATGGATGTTATTGCCAAAGCCTTTTCTCCTAAAGAAACAACATAAAGAAAGGCATAAAGGTCAATCTTACTCTTTGCTATATGCGGGGGATGATCCTCTTGAATCACAATCAGATGGTGTTCACCATAACAACGATGATTTTGATTTCAGTGAAATTTTTGTGCACCAACTTATACATACAATAGAATTTGTGCTTGGAGCTGTGTCCAATACTGCTTCATATCTTCGTTTATGGGCCCTTAGTCTAGCTCATTCAGAATTGTCTAGCGTCTTCTATGACAAAGTTTTACTTCTGGCTCTGGGGTATAACAATACAATTGTGATCATTATTGGCATTATCGTTTTTATATGCGCGACCGTTGGCGTCTTATTAATAATGGAAAGTCTAAGTGCTTTCTTGCATGCTTTAAGACTTCATTGGGTAGAGTTTCAGAACAAATTTTATGAGGGAGATGGTTACAAGTTCTTCCCATTTGGATTTGCAACCCTTGGCGATGAGGATGGACTGTAG 2460 0.3703 MENEHSSSSTMDMLRSEPMQLAQLIIPIESAQRTISYLGDLGLFQFKDLNEDKSPFQRTYASQVKRCGEMTRTMRLFKEQMTKTGISPSTRSTPNPGIDLEKLETKLAELEADLLEINSNNEKLQHSYNELLEYKLVLEKVGEFFPSAQNSAVVRQRELGVQPIVEGSIDSPLLIEQERTAYLVNQIKLGFICGLVNREKSIPFERILFRATRGNVFLKQAMVEEYVVDPLSREKVHKNVFVIFYSGERIKSKTTKICDAFGANRYPFSDDLSKQFQTITEVSGRLAELKTTIDMGLLHRSNLLQTVGYEFEQWNLLLKKEKSIYHILNMLSINVTKKCLLAEGWCPLSATSQIQKVLLQATTDCSSQVGAIFQVLQTKELPPTYFFTNKFTSSFQEIVDAYGIAKYQEANPGVYTIITFPFLFAVMFGDWGHGICLLLATLYFIINEKRFSSQKLGDILEMVFGGRYIILLMSLFSIYTGFIYNEFFSVPFELFGPTAYGCRDPSCRDATTIGLIKVRDTYPFGVDPKWHGSRSELPFLNSLKMKMSILLGVSQMNLGIILSYYNAKYFENNINIWHQFVPQILFLNSLFGYLSLLIIVKWCTGSQADLYHVMIYMFLSPTDDLGENQLFTGQKFLQIMLLLLALVAVPWMLLPKPFLLKKQHKERHKGQSYSLLYAGDDPLESQSDGVHHNNDDFDFSEIFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLALGYNNTIVIIIGIIVFICATVGVLLIMESLSAFLHALRLHWVEFQNKFYEGDGYKFFPFGFATLGDEDGL 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04460 819 PIRSF ATP6V0A1 9 818 IPR026028 GO:0000220|GO:0046961
Vifa2g04460 819 PANTHER VACUOLAR PROTON ATPASES 13 813 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vifa2g04460 819 Pfam V-type ATPase 116kDa subunit family 37 810 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vifa2g04460 819 Coils Coil 100 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04460 Vifa-Chr2 1308115707 1308119946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04460 11 817 Primary Pumps ATPases(2) AT2G21410 70.384 0.0 1202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04460 K02154 - gmx:100805813 1342.79