Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04459 ATGAGGAATTATGAAGCAATAAAGAGTTTTGAAGAGAATGAAAATGATGAAGATTTGGAGATTGGAAATCAAGAACAAGAACGTGAACATGAACAAGAACAGATCTCTGATTCAACAACAACAACAACCAAACTCAAGAACAAGATTTTTGTTGATGAACAACAACCTAAATCTCACCGTTTGCTTTCTCTTGATGTTTTTCGTGGCCTCACCATTGCGCTTATGATTTTGGTGGATGATGCTGGAGGACTCATTCCAGCACTCAATCATTCTCCATGGAATGGATTAACAATAGCAGATTTTGTAATGCCATTTTTTCTATTCATTGTTGGTGTTTCACTAGCATTCACATACAAGAAACCATCTTGCAAAGTTGATGCAACTAGAAAGTCAATTTTACGGGCGCTTAAGCTTCTCGCAAAGGAGGACATTTACTGGACCCATTTCCAGTTCATCCATTTCACCCAATTTTTGCACGACGATTTTCAACAACAGCTTGCACTTCCTAAAACATTTTCTGACAATTTAAAGAAGAAATTGCCAGAAAATGTGGTCCTTAAAGGTCCTAGTGGAGTTGTGTGGAATATAGGGCTGGTAATTAGAGATGATTCTGTTTACTTTGTGAACGGTTGGGAACGATTTGTGAAGGATCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCACTCTTTGAGGTTTTAGTCTTTGATGGAAACAGTTTCTGTGAGAAGGCAGCTTCTTATTTTGTTGGAAAATGTGGACCTGCTCAAACTGAACAAGGTGGTAGCAAGGCAAAGGACAACAGCAATTCTGTTGAAGAAGTCAATACTGCTTCTAATGGGGGTGTTACTGTTGAGTGTGGTTCATCTGAGAAACTTCGGCATCTTAAGAAAGTAGGAGCACCATTAGCTGTACCTTTTGAAGCTGCCAACGGGAAGACTTCCAATGATGGCGTAAGAACTGATTCCCCTGAGCTGTTCGCGGAGGATGCAGCCACTAAGACCACACATGTAGTAGTTCCCTTCCAATCAGCTGGAAAAAGGCCCAAGAAGCCTGTTAATGAAGTTACGCCTGTGTCCATACTAAGAAGCGAGGAAGATCAGTGA 1122 0.402 MRNYEAIKSFEENENDEDLEIGNQEQEREHEQEQISDSTTTTTKLKNKIFVDEQQPKSHRLLSLDVFRGLTIALMILVDDAGGLIPALNHSPWNGLTIADFVMPFFLFIVGVSLAFTYKKPSCKVDATRKSILRALKLLAKEDIYWTHFQFIHFTQFLHDDFQQQLALPKTFSDNLKKKLPENVVLKGPSGVVWNIGLVIRDDSVYFVNGWERFVKDHSLKENDFLVFKYNGESLFEVLVFDGNSFCEKAASYFVGKCGPAQTEQGGSKAKDNSNSVEEVNTASNGGVTVECGSSEKLRHLKKVGAPLAVPFEAANGKTSNDGVRTDSPELFAEDAATKTTHVVVPFQSAGKRPKKPVNEVTPVSILRSEEDQ 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04459 373 SMART B3_2 151 244 IPR003340 GO:0003677
Vifa2g04459 373 Pfam B3 DNA binding domain 160 242 IPR003340 GO:0003677
Vifa2g04459 373 Gene3D - 147 247 IPR015300 -
Vifa2g04459 373 CDD B3_DNA 153 242 IPR003340 GO:0003677
Vifa2g04459 373 MobiDBLite consensus disorder prediction 1 39 - -
Vifa2g04459 373 ProSiteProfiles B3 DNA-binding domain profile. 151 244 IPR003340 GO:0003677
Vifa2g04459 373 MobiDBLite consensus disorder prediction 263 288 - -
Vifa2g04459 373 MobiDBLite consensus disorder prediction 349 373 - -
Vifa2g04459 373 SUPERFAMILY DNA-binding pseudobarrel domain 150 244 IPR015300 -
Vifa2g04459 373 PANTHER LD22376P 30 140 - -
Vifa2g04459 373 MobiDBLite consensus disorder prediction 266 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04459 Vifa-Chr2 1307816876 1307818329 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04459 141 266 REM Transcription Factor Family AT4G33280 55.118 5.35e-43 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa2g04459 B3 1.9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04459 - - psat:127093533 407.912