Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04456 ATGAGGAATTATGAAGCAATAAAGAGTTTTGAAGAGAATGAAAATGATGAAGATTTGGAGATTGGAAATCAAGAACAAGAACGTGAACATGAACAAGAACAGATCTCTGATTCAACAACAACAACAACCAAACTCAAGAACAAGATTGTTGTTGATGAACAACAACCTAAATCTCACCGTTTGCTTTCTCTTGATGTTTTTCGTGGCCTCACCGTTGCGCTTATGATTTTGGTGGATGATGCTGGAGGACTCATTCCAGCACTCAATCATTCTCCATGGAATGGATTAACAATAGCAGATTTTGTAATGCCATTTTTTCTATTCATTGTTGGTGTTTCACTAGCATTCACATACAAGAAACCGTCTTGCAAAGTTGATGCAACTAGAAAGTCAATTTTACGGGCGCTTAAGCTTCTCGCGTTAGGCATTTTTCTCCAAGGAGGTTATGTTCATCGCCTTGCACTTCCTAAAACATTTTCTGACAATTTAAAGAAGAAATTGCCAGAAAATGTGGTCCTTAAAGGTCCTAGTGGAGTTGTGTGGAATATAGGGCTGGTAATTAGAGATGATTCTGTTTACTTTGTGAACGGTTGGGAACGATTTGTGAAGGATCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCACTCTTTGAGGTTTTAGTCTTTGATGGAAACAGTTTATGTGAGAAGGCAGCTTCTTATTTTGTTGGAAAATGTGGACCTGCTCAAACTGAACAAGGTGGTAGCAAGGCAAAGGACAACAGCAATTCTGTTGAAGAAGTCAATACTGCTTCTAATGGGGGTGTTACTGTTGAGTGTGGTTCATCTGAGAAACTTCGGCATCTTAAGAAAGTAGGAGCACCATTAGCTGTACCTTTTGAAGCTGCCAATGGGAAGACTTCCAATGCTGGTGTAAGAACTGATTCCCCTGAGCTGTTCGCGGAGGATGCAGCCACTAAGACCACACCTGTAGTAGTTCCCTTCCAATCAGCTGGAAAAAGGCCCAAGAAGCCTGTTAATGAAGTTACGCCTGTCGTCCATACTAAGAAGCGAGGAAGAGCAGTGAGAGAAAGAACTGTGTTTGAAGAAGGAGGATGA 1116 0.4059 MRNYEAIKSFEENENDEDLEIGNQEQEREHEQEQISDSTTTTTKLKNKIVVDEQQPKSHRLLSLDVFRGLTVALMILVDDAGGLIPALNHSPWNGLTIADFVMPFFLFIVGVSLAFTYKKPSCKVDATRKSILRALKLLALGIFLQGGYVHRLALPKTFSDNLKKKLPENVVLKGPSGVVWNIGLVIRDDSVYFVNGWERFVKDHSLKENDFLVFKYNGESLFEVLVFDGNSLCEKAASYFVGKCGPAQTEQGGSKAKDNSNSVEEVNTASNGGVTVECGSSEKLRHLKKVGAPLAVPFEAANGKTSNAGVRTDSPELFAEDAATKTTPVVVPFQSAGKRPKKPVNEVTPVVHTKKRGRAVRERTVFEEGG 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04456 371 Gene3D - 141 234 IPR015300 -
Vifa2g04456 371 PANTHER LD22376P 31 153 - -
Vifa2g04456 371 MobiDBLite consensus disorder prediction 250 269 - -
Vifa2g04456 371 Pfam Heparan-alpha-glucosaminide N-acetyltransferase, catalytic 60 148 IPR012429 -
Vifa2g04456 371 CDD B3_DNA 151 229 IPR003340 GO:0003677
Vifa2g04456 371 MobiDBLite consensus disorder prediction 253 269 - -
Vifa2g04456 371 SUPERFAMILY DNA-binding pseudobarrel domain 145 230 IPR015300 -
Vifa2g04456 371 MobiDBLite consensus disorder prediction 1 39 - -
Vifa2g04456 371 Pfam B3 DNA binding domain 151 229 IPR003340 GO:0003677
Vifa2g04456 371 MobiDBLite consensus disorder prediction 349 371 - -
Vifa2g04456 371 MobiDBLite consensus disorder prediction 334 371 - -
Vifa2g04456 371 SMART B3_2 144 231 IPR003340 GO:0003677
Vifa2g04456 371 ProSiteProfiles B3 DNA-binding domain profile. 138 231 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04456 Vifa-Chr2 1307800668 1307802152 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04456 136 253 REM Transcription Factor Family AT4G33280 52.101 3.68e-34 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa2g04456 DUF1624 4.9e-06 CL0316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04456 - K10532 psat:127093533 369.392