Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04439 ATGTATCCCAACCATTCATTCTCATCACTATCCTATGCCGATATGTTCACCGCGAGCCCTCTGTTACCTCACAACTATTACAATGAATCTGTAGGAGGAGAACAAAATGAGACAGTGTCAGTGACTATGCAGTCCATTGATCAACATTCCAATCCTTGCAACTCTCATTTAGATTGTGAGCAAACTATACAATGTCAAGGGTTGTCTCTTAGTCTAGGGACACTTTTGCCTTCTACATCATCTATCCCTCCATTTCAATATCAGTATCACGACGCCGGTTTTGTATCACTGATGAATAATGCTTGTCTTCCAAAGGGAACTACAATATCTAATGATGATGACTTGAAAAGTGTTGAATGTATGACTTCTATATCTTCTGGAGGCTTTCATGACATTACCAAAAGGGAAACTTTTCATGACTATCATCCCACTTCAGATCAATGCCTGCAGGGCTTGCCGTCGGGATTTGCTAACATTTTCTTAAACTCCCAATATCTTAAGGCTGCACAGGAGTTACTTGATGAGATAGTTAATGTCCGAAAGCAACGTGGAATGGAAAAACAAAACAAAATCCGCGACGTTGGATTAAATAACTCCAAAGACACTGATGGAAAATGTACTAGTCAGTCTAGGCAAATATCTTCAGGCCCTAATGATTCTAATTCCAATTCTTCTAGCCAATTATCCTCAGCAGAAAGACAGAATTGGTTGGATACGAAAACAAAACTTCTGTCCATCTTGGATGAGGTAGATAAGAGATACAGACAATACTGCCATCAAATGCAGATTGTGGTGTCATCTTTAGACATGGTTGCTGGATGTGGAGCAGCAGAACCATATACCACACTTGCATTGCGAACAATTTCACGCCATTTTCGTTGCCTGCGCGATGCAATCAGCACCCAAATTCAACTGATTCAAAGGAACCTTGGGGAACAAGAAGGAATTCCTCGTCTGCGGTATGTGGATCAACACCTTAGACAGCAAAAGGAACTTCAGCAACTTGGTGTTACGCGGCACGCTTGGAGGCCTCAAAGAGGACTTCCTGAAAACTCCGTTTCAATACTTCGCGCTTGGCTCTTTGAGCATTTTCTCAATCCTTACCCGAAGGATTCAGAGAAAATAATGCTAGCTAGGCAAACTGGTTTAACAAGGAATCAGGTGGCGAATTGGTTCATTAACGCGCGTGTGCGTCTTTGGAAACCAATGGTTGAGGAAATATACAAAGAAGAGTTTGGTGATTCTGAGATAAACAACAATAATTCATCAGAAAATCCACTCATCAAAGGTAAAAGAGATTACTATACTCAAGAAATTGAGTCACAGGACAATGTACAAACTATTACTATTGATGGTGTACATGCCTGTTCCACTAAAGAACATGCAATGGATTATTATGAAAGTAAAAAATTGCATGGTGGTAACGAAAGGTTCAGCGTGAAAAATGGCTTTTATTCAGAAATAGCTTGTGATACTGCCACATATGATTTATCAGAGATTGGTGGTGGCCACCACCACAACCAACAACAACAACAACAACAAAATGTCTCTCTTTCATTGGAGTTGAGGAACTGTGAAAGCGATGGCTTAGCCATATCAGATAATGCCAATCACAAAAGACACAACATCAACAATAATAATATTAATAATCAGATTTTGTCTTCTTCTTCAGGAAAGCAACAACACAGGTTTGGCAATACTCATTTGTTGCATGAGTTTGTCGTATAA 1728 0.3987 MYPNHSFSSLSYADMFTASPLLPHNYYNESVGGEQNETVSVTMQSIDQHSNPCNSHLDCEQTIQCQGLSLSLGTLLPSTSSIPPFQYQYHDAGFVSLMNNACLPKGTTISNDDDLKSVECMTSISSGGFHDITKRETFHDYHPTSDQCLQGLPSGFANIFLNSQYLKAAQELLDEIVNVRKQRGMEKQNKIRDVGLNNSKDTDGKCTSQSRQISSGPNDSNSNSSSQLSSAERQNWLDTKTKLLSILDEVDKRYRQYCHQMQIVVSSLDMVAGCGAAEPYTTLALRTISRHFRCLRDAISTQIQLIQRNLGEQEGIPRLRYVDQHLRQQKELQQLGVTRHAWRPQRGLPENSVSILRAWLFEHFLNPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGDSEINNNNSSENPLIKGKRDYYTQEIESQDNVQTITIDGVHACSTKEHAMDYYESKKLHGGNERFSVKNGFYSEIACDTATYDLSEIGGGHHHNQQQQQQQNVSLSLELRNCESDGLAISDNANHKRHNINNNNINNQILSSSSGKQQHRFGNTHLLHEFVV 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04439 575 SUPERFAMILY Homeodomain-like 343 408 IPR009057 -
Vifa2g04439 575 CDD homeodomain 342 403 IPR001356 GO:0003677
Vifa2g04439 575 Gene3D - 338 416 - -
Vifa2g04439 575 Coils Coil 162 182 - -
Vifa2g04439 575 ProSiteProfiles 'Homeobox' domain profile. 339 402 IPR001356 GO:0003677
Vifa2g04439 575 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 80 422 - -
Vifa2g04439 575 SMART prehox3 154 301 IPR006563 -
Vifa2g04439 575 Pfam Homeobox KN domain 359 398 IPR008422 GO:0003677|GO:0006355
Vifa2g04439 575 Pfam Associated with HOX 161 300 IPR006563 -
Vifa2g04439 575 MobiDBLite consensus disorder prediction 200 233 - -
Vifa2g04439 575 SMART HOX_1 342 406 IPR001356 GO:0003677
Vifa2g04439 575 MobiDBLite consensus disorder prediction 188 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04439 Vifa-Chr2 1302746816 1302748940 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04439 154 575 Homeobox Transcription Factor Family AT2G16400 45.767 2.32e-110 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vifa2g04439 POX 5.6e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04439 - - gmx:100807409 612.838