Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04438 ATGTCAAACTCAATGACCCATCAAAATCAATTTGAGAACCAAGATTTATTAGGTGCTGGTTATGTTTCATCTTCTTCTTTAAGGAACACTAACAATGCATATTCTGAAACATTTCATCACAATATTGAAGAGCTATCACAACAAGGCTCTGAAATGAGTCATACAAGACATTTGATGGATCTACTTGGAGCAGCAAACAACAATCATCAAACACAACAAGGTTTATCACTTTCTCTAGGCTCTCACATGCTTGTTGTTCCTTCTGAGGATTACAGAAACCGTTCCTTGAATCAAGGTCTTATGATTAACCCAAGTTACTTCATGTCTGGTCAAGAACAGACACGTGAGCCTTGTAATAATAATCTGACAAGTGATTATTTTTACGGAAGTTGTGGAAGTTTTGGTTCAGGTTCTTCTAATAACTCATTGTTGAACCGTTCTACTTCTACTTCTTATGGAAATGAGAGTTTTGGTTCTGTTATAGGAAACTCTAGATATCTTAAACCGGTACAATCACTTCTTGAAGATCTTGTTGATGTTGGTGGAAATGTGATTGATAGAATGAATGAAAAGTATGCAGAGAAATTGTTTCATGCAAGTAGAACAGGTGCTAGAACACTTTCATCTGAGCTTAAGGCTGAGTTGAGGATTCATGGACATTTGTTGGCTGATAAACATGAACATCAAGTCAAAATTGCAAAGCTCATTTCTTTGTTGGATGAGGTTGAGAGTAGATATGAGAAATACTACCATCAAATGGAAGAAGTGGTGTCATCTTTTGAAATGATAGCAGGTTTAGGAGCTGCCAAATGTTACACTGCTTTAGCACTTCAAGCAATGTCTAGACATTTTTGCAGCTTAAGAGATGCAATAATGTCACAAATAAATGTTGAGAAAAGAAAACTTTTTCAAGATGTACCAAAAATCAACAATGGATTATCTCAACTTAGCTTATTTGAGAAAGATAACAACAGACAGAATAGAATGTCTCTTCAACAACTTGGAATTATGCAAAACCAAAGACAAGTTTGGAGACCCATTAGAGGCTTACCTGAAACCTCTGTTGCAATTCTTCGTGCTTGGTTATTTGAGCACTTTCTTCATCCGTATCCTAATGATTCTGAGAAATTAATGTTGGCATCGCAAACCGGTTTAACTAAAAACCAAGTGTCAAATTGGTTTATAAATGCAAGGGTAAGGTTATGGAAACCAATGATAGAAGAAATGTACAAAGAAGAGTTTGGAGACTCATCTGAAGACTCCAACCCAGCAGCTAACAATTACATGTCAAGAGAAGATGCAACAGACTGTGTGGAGGATTAG 1323 0.3621 MSNSMTHQNQFENQDLLGAGYVSSSSLRNTNNAYSETFHHNIEELSQQGSEMSHTRHLMDLLGAANNNHQTQQGLSLSLGSHMLVVPSEDYRNRSLNQGLMINPSYFMSGQEQTREPCNNNLTSDYFYGSCGSFGSGSSNNSLLNRSTSTSYGNESFGSVIGNSRYLKPVQSLLEDLVDVGGNVIDRMNEKYAEKLFHASRTGARTLSSELKAELRIHGHLLADKHEHQVKIAKLISLLDEVESRYEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAIMSQINVEKRKLFQDVPKINNGLSQLSLFEKDNNRQNRMSLQQLGIMQNQRQVWRPIRGLPETSVAILRAWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGDSSEDSNPAANNYMSREDATDCVED 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04438 440 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 69 422 - -
Vifa2g04438 440 CDD homeodomain 344 405 IPR001356 GO:0003677
Vifa2g04438 440 Pfam Homeobox KN domain 361 400 IPR008422 GO:0003677|GO:0006355
Vifa2g04438 440 Pfam Associated with HOX 160 292 IPR006563 -
Vifa2g04438 440 Gene3D - 338 419 - -
Vifa2g04438 440 ProSiteProfiles 'Homeobox' domain profile. 363 404 IPR001356 GO:0003677
Vifa2g04438 440 SMART HOX_1 344 408 IPR001356 GO:0003677
Vifa2g04438 440 SMART prehox3 155 293 IPR006563 -
Vifa2g04438 440 SUPERFAMILY Homeodomain-like 350 412 IPR009057 -
Vifa2g04438 440 MobiDBLite consensus disorder prediction 413 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04438 Vifa-Chr2 1301875986 1301877697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04438 157 423 Homeobox Transcription Factor Family AT2G16400 50.186 7.13e-82 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vifa2g04438 POX 6.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04438 - - tpra:123893532 714.531