Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04430 ATGGCGACTCCGGTCGAGCCTCCGAACGGGATAAGAGCGGAAGGAAAGCATTATTATTCCATGTGGCAAACACTATTTGAGATCGACACTAAATATGTGCCGATTAAGCCGATTGGTCGAGGAGCCTATGGGATTGTGTGTTCTTCTGTTAATAGGGAGACAAATGAGAAAGTTGCGATCAAGAAGATACAGAACGCGTTTGAGAATCGTGTTGATGCGCTTAGAACTTTGCGGGAGCTTAAACTGCTTCGACATCTTCATCATGAGAATGTTATTGCTTTGAAGGATATTATGATGCCTGTTAATAGGAGTAGTTTTAAGGATGTTTATCTTGTTTATGAACTCATGGACACCGATTTGCATCAGATTATTAAATCTTCTCAAACATTGTCTAATGATCATTGCCAATATTTCCTCTTTCAGTTTGCTTCGGGGCTTGAAATATCTACACTCAGCTAA 459 0.4031 MATPVEPPNGIRAEGKHYYSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKKIQNAFENRVDALRTLRELKLLRHLHHENVIALKDIMMPVNRSSFKDVYLVYELMDTDLHQIIKSSQTLSNDHCQYFLFQFASGLEISTLS 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04430 152 Pfam Protein kinase domain 33 147 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04430 152 SUPERFAMILY Protein kinase-like (PK-like) 24 147 IPR011009 -
Vifa2g04430 152 ProSiteProfiles Protein kinase domain profile. 32 152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04430 152 FunFam Mitogen-activated protein kinase 18 126 - -
Vifa2g04430 152 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 31 147 - -
Vifa2g04430 152 SMART serkin_6 32 152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04430 152 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524
Vifa2g04430 152 Gene3D Phosphorylase Kinase; domain 1 19 115 - -
Vifa2g04430 152 Gene3D Transferase(Phosphotransferase) domain 1 116 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04430 Vifa-Chr2 1299463809 1299464586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04430 1 147 MAP Kinase Gene Family AT2G18170 85.034 6.38e-93 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vifa2g04430 Pkinase 3.4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04430 K20535 - gmx:100798863 272.707