Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04428 ATGTCAAAATCAATAGAACTCCCTAATTGCACCTATCCACGTGAACCAGTAACTAATATTCCACCAAGTGCTCCAACACCAAAACATTATCTCTATCTTTCCAATCTTGATGACCAAAAGTTTCTTAGATTTTCAATAAAGTATGTGTACATTTTCAAGAAATCAGTGAACTTGAATAACTTGAAATCTTCTCTGTCTAGAGTTTTGGTGGATTATTATCCTTTAGCAGGGAGGTTGAGAAGGTGTTCCTCTAATTTGGACGATGATGATGGTGATGATGAGAAGAAGCTTGAGGTGGATTGTAATGGAAAAGGTGGTTTATTTGTTGAAGCTTTCATGGATATTACTGCAGATGAATTAGTTGAACATTCTAAGTTTCCGAATAAATCATGGAGGAAGTTTTTGTATAAGGTGGAATCTCAGAGTTTCTTAGATGTTCCTCCACTTGTTGTTCAGGTAACAATCCTCAGTTGCGGTGGAATGATTCTCTGCACCGCAATCAACCACGCCCTATGCGACGGAATCGGCACATCTCAATTCCTCCACGCATGGGCCCATCTTACCACATCTCCCAAAACCAATCTAACCATCTCACCCTTCCACTCCCGCCACGTGTTGCACCCACGACAACCAGCTACCGTAAACCTCCATAACCACGCATACACCAGATCTCAACCAAACCCTCAAATAAACCTCCATAAATCAATCCAGTCTCAGCCCTTAATACCCACATCCTTTACCTTTAATTCCACCCATATCCTCTCTTTAAAAAAACAATGCACCCCTTCACTAAAATGCACCACCTTTGAAGTAATCGCAGCGCACACATGGCGCTCTTGGATTCGTTCATTAAATTTAATGTTACCATTACCCTCCACATTAAACGTGAAGCTACTTTTCTCTGTTAACTTTCGCTCCGTTATGAATTTACCAAAAGGATATTACGGAAATGGGTTTCTATTAGCGTGTGCCGAAAGTAAAATAGAAGATTTATTGGACAATAATAACCTTCACTATGTTGTGAAGTTAGTGCAACAAGCAAAATCAACGGTGAATGATGAGGAATATATAAGATCAACGGTTGATTTGTTGGAGGATAAAACAGTAAAAACGGATGTTTCAACTAGTTTGGTTATTTCACAGTGGTCGAAACTGGGGTTAGAAGATGTGGATTTTGGAGAGGGAAAAGCGTTGCATATGGGTCCTTTGACTAGTGATGTTTATTGTTTGTTTTTACCAGTGGTTGGCGATGGCGTTGATGGTGTGAGAGTGGTGGTTTCTGTGCCGGAGAATATGGCGGAGAGTTTTGAGTATCAGATGAGTGGAAGTTGGGAGAAGAAAAGGGAAAATGGTGATAAGGTTAAAAATGGGTTTCATGCGAATGAGATTTTGTTTTTGTGA 1401 0.4004 MSKSIELPNCTYPREPVTNIPPSAPTPKHYLYLSNLDDQKFLRFSIKYVYIFKKSVNLNNLKSSLSRVLVDYYPLAGRLRRCSSNLDDDDGDDEKKLEVDCNGKGGLFVEAFMDITADELVEHSKFPNKSWRKFLYKVESQSFLDVPPLVVQVTILSCGGMILCTAINHALCDGIGTSQFLHAWAHLTTSPKTNLTISPFHSRHVLHPRQPATVNLHNHAYTRSQPNPQINLHKSIQSQPLIPTSFTFNSTHILSLKKQCTPSLKCTTFEVIAAHTWRSWIRSLNLMLPLPSTLNVKLLFSVNFRSVMNLPKGYYGNGFLLACAESKIEDLLDNNNLHYVVKLVQQAKSTVNDEEYIRSTVDLLEDKTVKTDVSTSLVISQWSKLGLEDVDFGEGKALHMGPLTSDVYCLFLPVVGDGVDGVRVVVSVPENMAESFEYQMSGSWEKKRENGDKVKNGFHANEILFL 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04428 466 Gene3D - 240 442 IPR023213 -
Vifa2g04428 466 Gene3D - 15 223 IPR023213 -
Vifa2g04428 466 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 20 437 - -
Vifa2g04428 466 Pfam Transferase family 20 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04428 Vifa-Chr2 1297748825 1297750531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04428 18 402 Monolignol Biosynthesis Gene Families AT5G48930 29.009 2.76e-42 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04428 - - gmx:100810619 610.142