Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04427 ATGGAATTGGGTGAGATTGCTGCCAGACATCTCTTTGAGATTGACCCTACGGATTCTGGAAGTTATGTTCTTCTAGCAAATACTTATGCAGCAAATGGTAAACGGGAACCTTGGCCCAGTATTTCTGAAAGTGCTAAAAGTCTTGTTAAGCAAATGTTAGAACCTGGCCCTAAGCTTCGATTAACGGCAAAACAAGTTCTTGAGCATCCTTGGCTCCAAGATGCTAAGAAGGCTCCAAATGTTCCTCTTGGAGATGTCGTCAAGTCAAGGCTTAAGCAATTCTCAATGATGAATCGATTCAAAAGAAAAGCCCTTAGGGTAATTGCTGATTTCTTATCCAATGAACAAGTTGAAGACATCAAAGAGATGTTCAAGAAGATGGATACTGATAATGATGTGGTAGATAATAATGGTAAGGGAACACTAGACTACGGAGATTTTGTTTCCATTTCCCTTCATTTAAAAAGAATGGATAATGACGAGCATCTTCACAAGGTCTTCTCCTATTTTGACAAAGATGGGAACGGATATATTGAACCAGAAGAGCTACCGAATGCCTTGATGGAAGATGGAATTGATTACTGTACAGATGTAGTAAATGATATTTTACAATAA 615 0.3854 MELGEIAARHLFEIDPTDSGSYVLLANTYAANGKREPWPSISESAKSLVKQMLEPGPKLRLTAKQVLEHPWLQDAKKAPNVPLGDVVKSRLKQFSMMNRFKRKALRVIADFLSNEQVEDIKEMFKKMDTDNDVVDNNGKGTLDYGDFVSISLHLKRMDNDEHLHKVFSYFDKDGNGYIEPEELPNALMEDGIDYCTDVVNDILQ 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04427 204 ProSitePatterns EF-hand calcium-binding domain. 171 183 IPR018247 -
Vifa2g04427 204 Gene3D - 159 194 - -
Vifa2g04427 204 Pfam E motif 1 34 IPR046848 -
Vifa2g04427 204 CDD EFh 119 183 IPR002048 GO:0005509
Vifa2g04427 204 SUPERFAMILY Protein kinase-like (PK-like) 28 100 IPR011009 -
Vifa2g04427 204 Gene3D Transferase(Phosphotransferase) domain 1 3 82 - -
Vifa2g04427 204 Gene3D - 134 158 - -
Vifa2g04427 204 Gene3D - 98 112 - -
Vifa2g04427 204 Gene3D - 89 132 - -
Vifa2g04427 204 PANTHER SERINE/THREONINE-PROTEIN KINASE 34 185 - -
Vifa2g04427 204 SMART efh_1 119 154 IPR002048 GO:0005509
Vifa2g04427 204 SMART efh_1 162 190 IPR002048 GO:0005509
Vifa2g04427 204 ProSiteProfiles EF-hand calcium-binding domain profile. 158 193 IPR002048 GO:0005509
Vifa2g04427 204 SUPERFAMILY EF-hand 109 204 IPR011992 -
Vifa2g04427 204 Pfam EF-hand domain 163 188 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04427 Vifa-Chr2 1297733069 1297733770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04427 34 204 EF-hand Containing Proteins AT1G74740 54.500 3.69e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa2g04427 EF-hand_6 2e-06 CL0220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04427 K13412 - gmx:100783922 296.204