Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04422 ATGATTATGGAACCTAGAAATAATCTCCATCATCTTCAAGACCAACAACAATCTCCACCTGTTTCTTCTTTTTCTTCTTCTATCCCATCATCTTATGCAGATGGAGGAACCACCACCATCCACTCTTGGACCCCAACAAACATCACTTTGAATAATGCTGCTGGTAACTTCAACTCGAATCTCCAAGAAGCTAATCCGAGATATTCGAGATCAAGCGCGATGATTCAAGATTTACGTTATCATCATCAATGGACTAGTGATGATGTTAACAGAAACCATGAATCAGATTCTATTAAGGAAGAGATTTCATTTGCTAATTTTCCTAAATTTACTGAAATGCTTAATTACACTCCTCCTAATTCAAGCATGGAAAACTATGGAGTACTCGATGATTCTTCCGCTATAATACAGATGAAGAATAGTACTAATGATGAACACAAGGATATGAATGTTCTCATGCTCAAGAATCTTTACACTGGTGGAAACTTTTATAATACTCCAAACTATCCTAACATTAATGGTAGCCAGATTCACCCTAGTATAAATATCTCGAACTTGAATCAGTACTCGTCTTCGTCTTCTACCACGACTCTGGATATGAACATGCAGTCATTAGATCTATTAACTAGTTCACAAGATCATCATCTTGGTAGATTTACTACTCATGATCATGAAAATCTTTCTTTTCATCTTCATCCTTTGCCGAACCAACTCGCAAACAGATCCTCGAATACTAACTCAATTAATAAGCCGTCACTACTCAGCAATGGTGGTGGAGAAACAAAGAGAGTGATGCAATCGAAGGCTTCTCAATCTGAAACGGCCTTGAAGAAATCACGATCTTCATCGGAATCACGACCTTCGTGTGCACCGTTCAAGGTTAGGAAAGAAAAATTAGGAGATAGAATTGCGGCTCTTCAACAGTTAGTGGCTCCTTTTGGAAAGACTGACACTGCATCTGTACTCATGGAAGCTATTGGATACATTAAATTCCTTCAAGGCCAAGTCGAGACACTGAGTGTTCCTTATATGAAATCGTCGCAAAGCCAAACCAACAGATTGATGCAAGGGGATTCACCCATAGGTGACACAAATGGAGAACCAAAGCAATATCTGAGAAGTCGAGGCCTGTGTCTCGTGCCATTGTCATGCATGTCATACATAGCGGGTGATGGCAGCACTGAGGCGTGGCAACAACGCCCGAACTTCGGCGGACCAGCTTGA 1224 0.4044 MIMEPRNNLHHLQDQQQSPPVSSFSSSIPSSYADGGTTTIHSWTPTNITLNNAAGNFNSNLQEANPRYSRSSAMIQDLRYHHQWTSDDVNRNHESDSIKEEISFANFPKFTEMLNYTPPNSSMENYGVLDDSSAIIQMKNSTNDEHKDMNVLMLKNLYTGGNFYNTPNYPNINGSQIHPSINISNLNQYSSSSSTTTLDMNMQSLDLLTSSQDHHLGRFTTHDHENLSFHLHPLPNQLANRSSNTNSINKPSLLSNGGGETKRVMQSKASQSETALKKSRSSSESRPSCAPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQGQVETLSVPYMKSSQSQTNRLMQGDSPIGDTNGEPKQYLRSRGLCLVPLSCMSYIAGDGSTEAWQQRPNFGGPA 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04422 407 FunFam Transcription factor bHLH123 family 293 355 - -
Vifa2g04422 407 CDD bHLH_AtbHLH_like 291 340 IPR045239 -
Vifa2g04422 407 MobiDBLite consensus disorder prediction 1 31 - -
Vifa2g04422 407 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 132 386 - -
Vifa2g04422 407 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 293 347 IPR036638 GO:0046983
Vifa2g04422 407 MobiDBLite consensus disorder prediction 9 31 - -
Vifa2g04422 407 MobiDBLite consensus disorder prediction 234 288 - -
Vifa2g04422 407 MobiDBLite consensus disorder prediction 234 293 - -
Vifa2g04422 407 Gene3D - 293 356 IPR036638 GO:0046983
Vifa2g04422 407 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 283 332 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04422 Vifa-Chr2 1296280120 1296282708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04422 29 405 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 37.277 8.48e-54 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04422 - - mtr:25490216 523.857