Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04421 ATGGAACCTAGAAATAATCTCCATCATCTTCAAGACCAACAACAATCTCCACCTGTTTCTTCTTTTTCTTCTTCTATCCCATCATCTTATGCAGATGGAGGAACCACCACCATCCACTCTTGGACCCCAACAAACATCACTTTGAATAATGCTGCTGGTAACTTCAACTCGAATCTCCAAGAAGCTAATCCGAGATATTCGAGATCAAGCGCGATGATTCAAGATTTACGTTATCATCATCAATGGACTAGTGATGATGTTAACAGAAACCATGAATCAGATTCTATTAAGGAAGAGATTTCATTTGCTAATTTTCCTAAATTTACTGAAATGCTTAATTACACTCCTCCTAATTCAAGCATGGAAAACTATGGAGTACTCGATGATTCTTCCGCTATAATACAGATGAAGAATAGTACTAATGATGAACACAAGGATATGAATGTTCTCATGCTCAAGAATCTTTACACTGGTGGAAACTTTTATAATACTCCAAACTATCCTAACATTAATGGTAGCCAGATTCACCCTAGTATAAATATCTCGAACTTGAATCAGTACTCGTCTTCGTCTTCTACCACGACTCTGGATATGAACATGCAGTCATTAGATCTATTAACTAGTTCACAAGATCATCATCTTGGTAGATTTACTACTCATGATCATGAAAATCTTTCTTTTCATCTTCATCCTTTGCCGAACCAACTCGCAAACAGATCCTCGAATACTAACTCAATTAATCCGTCACTACTCAGCAATGGTGGTGGAGAAACAAAGAGAGTGATGCAATCGAAGGCTTCTCAATCTGAAACGGCCTTGAAGAAATCACGATCTTCATCGGAATCACGACCTTCGTGTGCACCGTTCAAGGTTAGGAAAGAAAAATTAGGAGATAGAATTGCGGCTCTTCAACAGTTAGTGGCTCCTTTTGGAAAGACTGACACTGCATCTGTACTCATGGAAGCTATTGGATACATTAAATTCCTTCAAGGCCAAGTCGAGACACTGAGTGTTCCTTATATGAAATCGTCGCAAAGCCAAACCAACAGATTGATGCAAGGGGATTCACCCATAGGTGACACAAATGGAGAACCAAAGCAATATCTGAGAAGTCGAGGCCTGTGTCTCGTGCCATTGTCATGCATGTCATACATAGCGGGTGATGGCAGCACTGAGGCGTGGCAACAACGCCCGAACTTCGGCGGACCAGCTTGA 1215 0.4058 MEPRNNLHHLQDQQQSPPVSSFSSSIPSSYADGGTTTIHSWTPTNITLNNAAGNFNSNLQEANPRYSRSSAMIQDLRYHHQWTSDDVNRNHESDSIKEEISFANFPKFTEMLNYTPPNSSMENYGVLDDSSAIIQMKNSTNDEHKDMNVLMLKNLYTGGNFYNTPNYPNINGSQIHPSINISNLNQYSSSSSTTTLDMNMQSLDLLTSSQDHHLGRFTTHDHENLSFHLHPLPNQLANRSSNTNSINPSLLSNGGGETKRVMQSKASQSETALKKSRSSSESRPSCAPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQGQVETLSVPYMKSSQSQTNRLMQGDSPIGDTNGEPKQYLRSRGLCLVPLSCMSYIAGDGSTEAWQQRPNFGGPA 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04421 404 MobiDBLite consensus disorder prediction 232 290 - -
Vifa2g04421 404 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 127 383 - -
Vifa2g04421 404 MobiDBLite consensus disorder prediction 232 285 - -
Vifa2g04421 404 MobiDBLite consensus disorder prediction 1 29 - -
Vifa2g04421 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 290 344 IPR036638 GO:0046983
Vifa2g04421 404 CDD bHLH_AtbHLH_like 288 337 IPR045239 -
Vifa2g04421 404 FunFam Transcription factor bHLH123 family 290 352 - -
Vifa2g04421 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 280 329 IPR011598 GO:0046983
Vifa2g04421 404 MobiDBLite consensus disorder prediction 8 29 - -
Vifa2g04421 404 Gene3D - 290 353 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04421 Vifa-Chr2 1296280120 1296282702 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04421 27 402 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 35.874 1.27e-53 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04421 - - mtr:25490216 517.309