Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04409 ATGCTTTCCCAATTGGTAAAGGAATATTCTTATATGTGTAACTTTGTTGGTGTCTTATTGATGTTGTTATCATGTTTTAAAATGTTGGTAGCACTTTGGTGCAAAAAAAACAAGTCCAGTAGTGTTATTGGAAGTCCTCCAGGAAATAGGGGATTACCCTTCATAGGAGAGACACTGCATTTCATGGCTGCCATCAATAGTACTAAAGGAGTCTACGAATTTGTTCGACTTCGCCGCCTCCGATATGGAAATTGCTTCAAGACCAAGTTATTCGGGGAAACACATGTATTTATTTCGAGCAAGGAGTCAGCAAAGACAATTCTAAGAAACGAAGGAGGGAAGTTCTCAAAGAAGTACATAAAGTCAATCTCCAAGCTCTTGGGTCCTGATAGTTTGCTGTGTGCAGCTGAGCAGCATCACAAACTTATTCGAAGCCGTCTTTTCAATTTGTTCTCACCTCATTCTTTGTCTTCTTTTGTTCAACTCTTCGATCGACTTGTAGTCAAAGCTGCAAGTACCTGGACATGTGGGTCCCTTCTCATCATACAAGATGAAGCCCTCAAGCTAGCTTGTAAGGCAATGTGCAAGATGCTAATAAGCATTGAAAATGGTGATGAACTAATGGTAATGCAAAAGAATGTTTCTTGTGTGTCTGAAGCAATGCTTGCACTGCCTTTGAGATTACCATGGACCCGATTCTACAAAGGCCTTCAGGCTCGAAAAAGAATTATGGACATATTGGAGAAAGTTATCAGCGAAAGAAGAGGCGGAATCGCAACTAGCCATGTAGATTTTCTTCAACAACTTTTGGCAAATGATGATAATAAATTAGAAAAAGATGAAGTTATAACAAGGCTAACAGATGAAGAGATCAAAGATAATATCTTAACTATGATTATTGCTGGACAGGACACTATAGCAATTGCAATGACATGGATGATCAAATTTGTGGATGAGAATCAAGATGTTCTTAATGAACTTAAGAAGGAACAAGATGAGATTGAGAAAAATTGTAGAGGAAGTGTGAATCTTACATTAGAGACTCTTTCTGAGATGCAGTATGCATCCAAGGTAGTAAAAGAAGCACTAAGGATGGCATCTGTAGTGCAATGGTTGCCTAGAGTAGCACTCGAGGACTGCGAAATCGAAGGATTTGAGATCAAGAAAGGTTGGAACATTAATATTGATGCTAGATCAATACATCATGATCCAAGTGTTCATAACGACCCGAATGTGTTCAATCCTGCAAGATTTCCTAGTGAGTCAAAACCAAACAGCTTCTTAGCTTTTGGGATTGGAGGAAGAATGTGTCTTGGGAAGAACATGGCTGAAGCAATGATGCTGGTGTTTCTTCATCGTCTCATCACTCGTTTCAAGTGGAAGGTGATTGATTCTGACTCGAGTATTCAAAAATCGGCACTTTTTACAAAACTTAAGAGTGGTTATCCCATTCGTTTGATATATGTGAAGGAAGAAGAGATGAACAAAAAAATTGTGTGA 1500 0.388 MLSQLVKEYSYMCNFVGVLLMLLSCFKMLVALWCKKNKSSSVIGSPPGNRGLPFIGETLHFMAAINSTKGVYEFVRLRRLRYGNCFKTKLFGETHVFISSKESAKTILRNEGGKFSKKYIKSISKLLGPDSLLCAAEQHHKLIRSRLFNLFSPHSLSSFVQLFDRLVVKAASTWTCGSLLIIQDEALKLACKAMCKMLISIENGDELMVMQKNVSCVSEAMLALPLRLPWTRFYKGLQARKRIMDILEKVISERRGGIATSHVDFLQQLLANDDNKLEKDEVITRLTDEEIKDNILTMIIAGQDTIAIAMTWMIKFVDENQDVLNELKKEQDEIEKNCRGSVNLTLETLSEMQYASKVVKEALRMASVVQWLPRVALEDCEIEGFEIKKGWNINIDARSIHHDPSVHNDPNVFNPARFPSESKPNSFLAFGIGGRMCLGKNMAEAMMLVFLHRLITRFKWKVIDSDSSIQKSALFTKLKSGYPIRLIYVKEEEMNKKIV 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04409 499 PANTHER CYTOCHROME P450 26 45 464 - -
Vifa2g04409 499 Pfam Cytochrome P450 46 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04409 499 PRINTS P450 superfamily signature 428 437 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04409 499 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04409 499 PRINTS P450 superfamily signature 301 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04409 499 PRINTS P450 superfamily signature 437 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04409 499 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 430 439 IPR017972 GO:0005506|GO:0016705
Vifa2g04409 499 Gene3D Cytochrome P450 34 488 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04409 499 SUPERFAMILY Cytochrome P450 44 486 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04409 499 PRINTS E-class P450 group I signature 290 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04409 499 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04409 499 PRINTS E-class P450 group I signature 396 420 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04409 499 PRINTS E-class P450 group I signature 79 98 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04409 499 PRINTS E-class P450 group I signature 437 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04409 499 PRINTS E-class P450 group I signature 427 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g04409 499 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Vifa2g04409 499 Coils Coil 313 337 - -
Vifa2g04409 499 CDD CYP90-like 78 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04409 Vifa-Chr2 1293202628 1293205220 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04409 11 460 Cytochrome P450 AT1G19630 56.071 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04409 - - lang:109327951 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04409 2 1293202628 1293205220 Vifa2g04409 2 1293202628 1293205220 ECH