Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04369 ATGGAAGAATCTCAGAAAAATCCTCCACCAATGCCACCACTTTCCACCACATCGCCACCGCCAAAAAAGAAGCGAAACCTCCCTGGAATGCCAGATCCAGAAGCTGAAGTAATCGCTTTATCTCCCAACACGTTACTAGCGACGAATCGTTTCGTTTGCGAGATCTGTAACAAAGGCTTCCAACGCGAACAGAATCTGCAACTTCACCGGCGAGGCCATAACATGCCGTGGAAGCTCCGGCAGCGAGGGAGCAACGAGAATCGCAAGAAAGTGTATGTATGTCCTGAACCTTCCTGTGTTCATCATAATCCGTCAAGAGCGTTAGGTGACCTCACCGGCGTGAAAAAGCACTTTAGTAGAAAGCACGGCGAGAAGAAGTGGAAATGTGAACGTTGTTCGAAGAATTACGCTGTGAAATGTGATTGGAAAGCTCATATGAAGTGTTGTGGAAGTAGAGAGTATAAATGTGATTGCGGCACTTTGTTTTCTAGGAGGGATAGTTTCATTACGCACAGAGCGTTCTGTGATGTTGTGGCGGAGGAAAGTGGTAAAGGAGGTGGCAATGTTATTGATGCGGCGGTTTCTTCTCCGGCGACAGCTCCGGTGACTCCGTCAACGATATCTGCGCTGTCTCCTACTTTATCGTCTATTCAGAGCTCAGATATTGCAGAAAACACAACAAGATTGTCACCACCACCATCTTCAAATGCTACCACTTCCACTTCTACTAGCTGTTATTCTTCATTCAGCACTCTCATGTCAAGTTTGACTCACTCACATTGTCCTACAGCTTTCTCTGTCACTGAACCCACAACCCTCTCACTTTTCACACCACTCTATCTCTCCAACAACCATGATTATCCTGTTTCCCACTACAGCACTGCATCTCCACAACCTGCATTATCTGCCACTGCATTACTCCATAAAGCTGCTCAAATGGGTTCATCTTCGTCTAACGCGTCCTTGCTTCGCGCTTTAGGCTTGAAAGAAAACAATGTCAGTAGTATTAACAGTACCACAACAGTACCATGGAAGAATGGACATGATGATCATGTAAAGCAAGAGAATGAGCCTGTGACAGATTACCTTGGGCTTGGACTTCCCTCTGGGAATGAAATGATAGGCTCAACGGGCCAGCCGATGACCCGTGATCTTCTTGGTTTAAGCATGGGATTGGGTAGAGGGGATGATCTTTCTGCTTTGCTCACATCTTTTGGAGGGAACTTTGATTCATCCACAAAGAGATGA 1248 0.4623 MEESQKNPPPMPPLSTTSPPPKKKRNLPGMPDPEAEVIALSPNTLLATNRFVCEICNKGFQREQNLQLHRRGHNMPWKLRQRGSNENRKKVYVCPEPSCVHHNPSRALGDLTGVKKHFSRKHGEKKWKCERCSKNYAVKCDWKAHMKCCGSREYKCDCGTLFSRRDSFITHRAFCDVVAEESGKGGGNVIDAAVSSPATAPVTPSTISALSPTLSSIQSSDIAENTTRLSPPPSSNATTSTSTSCYSSFSTLMSSLTHSHCPTAFSVTEPTTLSLFTPLYLSNNHDYPVSHYSTASPQPALSATALLHKAAQMGSSSSNASLLRALGLKENNVSSINSTTTVPWKNGHDDHVKQENEPVTDYLGLGLPSGNEMIGSTGQPMTRDLLGLSMGLGRGDDLSALLTSFGGNFDSSTKR 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04369 415 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 13 389 IPR031140 -
Vifa2g04369 415 SMART c2h2final6 51 73 IPR013087 -
Vifa2g04369 415 SMART c2h2final6 92 122 IPR013087 -
Vifa2g04369 415 SMART c2h2final6 127 147 IPR013087 -
Vifa2g04369 415 Gene3D Classic Zinc Finger 90 175 - -
Vifa2g04369 415 FunFam protein indeterminate-domain 5, chloroplastic-like 105 184 - -
Vifa2g04369 415 MobiDBLite consensus disorder prediction 1 34 - -
Vifa2g04369 415 MobiDBLite consensus disorder prediction 221 240 - -
Vifa2g04369 415 MobiDBLite consensus disorder prediction 1 19 - -
Vifa2g04369 415 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Vifa2g04369 415 FunFam protein indeterminate-domain 12-like 30 98 - -
Vifa2g04369 415 Gene3D Classic Zinc Finger 51 89 - -
Vifa2g04369 415 Pfam Zinc-finger double-stranded RNA-binding 51 73 IPR022755 -
Vifa2g04369 415 SUPERFAMILY beta-beta-alpha zinc fingers 50 147 IPR036236 -
Vifa2g04369 415 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 73 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04369 Vifa-Chr2 1284294938 1284298037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04369 22 407 IDZ Gene Family AT3G50700 49.879 7.78e-116 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa2g04369 zf-C2H2_jaz 4.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04369 K25869 - psat:127082208 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04369 2 1284294938 1284298037 Vifa2g04369 2 1284294938 1284298037 ECH