Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04367 ATGAGAACCTTAAGAAGCTTCGATGGCTTCCCTTTAAATTTGAGCAACTTCTATGGTGGCTGCGCTATTCTTCTTCTTCTTGTTGTTGTTGTTACTTTATTGTTTCTTCTGAACCGTAAGAGCAGATCCCTGTTGGCGTCCTCTTTGATCTCCGATTCTAGCAATTTAAACCCAAGAACCTCAAACACTGTCACTGATGCTGATTTGAAGTTTTTAATGGATGAAATTCTAAATCAGAACCATAAATGGGAGGATGTCATAGATAAACAAATCATCATCTATGCTACAAAGCTAAATCCACAAAACCTAAGAACTTGTTGTCCTTGGATGTTGCAGAATGGTCCCCTGAAATATTGGAGTATGACTGTGTTCAATGATATTTCCGCCGAGATGCTAAGAAACTTCTACATGGACAATCACTACAGAAAGCAATGGGATAACACTGTGGTCGAACACAATCAGCTGCAGCTGGATGAATCTGATGGTTCTGAAGTTGGTCGTACAGGTCAGACTCCATTGTTTCCTCGTATTTTTGGTCATGAAGCTGGAGGGATCGTGGAGAGCGTAGGTGAAGGTGTGACTCATCTGAAACCAGGGGATAAAGCCCTGCCTGTATTCACAGGGGAGTGTGGTGAATGTCCACATTGTAAGTCGGAGGAGAGCAACATGTGTGATCTTCTTAGGATCAACACTGACAGAGGTGTCATGCTCAATGATAACAAGTCTAGATTCTCTATCAATGGAGAGCCCATAAACCATTTCGTGGGCACCTCTACATTCAGTGAGTACACAGTGGTTCATGCTGGATGTGTTGCAAAGATCAATCCTGAAGCACCACTTGACAAAGTTTGTATTCTCAGTTGTGGAATATGCACAGGTCTTGGTGCTACTGTGAATGTTGCAAAACCAAAGCCAGGTTCTTCAGTTGCTATCTTTGGGCTTGGAGTTGTTGGCCTTGCTGCTGCTGAAGGTGCAAGGATCTCTGGTGCATCAAGAATCATTGGAGTTGATTTAGTTTCCAGCCGATTTGAATTAGCTAAGAAGTTTGGAGTGAATGAGTTCGTGAACCCGGAAGTAGATTAA 1083 0.4266 MRTLRSFDGFPLNLSNFYGGCAILLLLVVVVTLLFLLNRKSRSLLASSLISDSSNLNPRTSNTVTDADLKFLMDEILNQNHKWEDVIDKQIIIYATKLNPQNLRTCCPWMLQNGPLKYWSMTVFNDISAEMLRNFYMDNHYRKQWDNTVVEHNQLQLDESDGSEVGRTGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDKALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMLNDNKSRFSINGEPINHFVGTSTFSEYTVVHAGCVAKINPEAPLDKVCILSCGICTGLGATVNVAKPKPGSSVAIFGLGVVGLAAAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPEVD 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04367 360 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 179 193 IPR002328 GO:0008270|GO:0016491
Vifa2g04367 360 PANTHER ALCOHOL DEHYDROGENASE 166 358 - -
Vifa2g04367 360 Pfam Alcohol dehydrogenase GroES-like domain 171 273 IPR013154 -
Vifa2g04367 360 FunFam S-(hydroxymethyl)glutathione dehydrogenase 293 360 - -
Vifa2g04367 360 Gene3D - 164 292 - -
Vifa2g04367 360 SUPERFAMILY Bet v1-like 66 160 - -
Vifa2g04367 360 Gene3D - 293 358 - -
Vifa2g04367 360 SUPERFAMILY GroES-like 170 297 IPR011032 -
Vifa2g04367 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 279 357 IPR036291 -
Vifa2g04367 360 FunFam alcohol dehydrogenase 1-like isoform X1 147 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04367 Vifa-Chr2 1283785494 1283787234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04367 174 355 Monolignol Biosynthesis Gene Families AT1G72680 27.322 1.08e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04367 K18857 - gmx:100801918 356.295