Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04348 ATGCAAGCAATGGGGTTATCAGTAGCAGTTTCAGTTCCATTTTACCATTCCAGATTATGCATCAACGCCTCTCCTCATCCACCCATTCCCCTCAATTTGAATCATGGCTTTTCCAAATCACTTACATTCAGGGACAGACTAACTCGTGGGAAGAGTAGCTATATCATTCGTTCCCAAAAGAATCGTGACGATGATGGTGATGTCGATGGATTTTACATGAGGAAAAGCGTTGAGCTCGCCAGAAAGGCTTTGGGGTGTACAAGCCCCAATCCTTTAGTTGGATGTGTTATTGTCAAAGATGGTCAAATTGTTGGCCAAGGTTTTCATCCTAAACCTGGTCAACCTCATGCTGAGGTGTTTGCTCTGAGAGATGCTGCTGATTTGGACGAGAATGCAACGGCGTATGTCACTTTAGAACCTTGTAATCATTTTGGGAGGACTCCGCCTTGCACTGAAGTTCTCATTAAAGCTAGACTTAAAAAGGTTGTTGTTGGGATGGTGGATCCAAATCCTATCGTGGCTTCCAAAGGGTTAGATAGATTGAGAGGTGCTGGAATTGAAGTTGTTGTTGGTGTTGAGGAAGAATTGTGTAAGGGCCTCAATGAGGGTTATATTCATCACATGTTGACCCAGAAGCCTCTGCTTACTTTGAGGTATTCTCTTTCTGTCAACGGAAAATTGTTGGACTCACTTGGGAATGGAGTAACTCACTCTGGTGGATACTATTCTAGGCTATTACAAGAATATGATGCAGTTATATTATCCTCTTCTTTATTCCGTGAAACTTTATCGGTCGACTCCGTACCTTCATCTCAAGAACCTGGAGCCAATCAACCCATTCGGTTTATAATGCATAGAGATCCTGGTTCTGGTTCTTCAAATCAAATTCCATTTATAATCGATAACGTTACTGATAAAATGATAATCTTTACAGATTGTATAACAACAGCTCCCGAGGAGACTCAACAAGGAATTAAAACTGTATCTGTGGATCAAATAAATCTTGATGTGATCTTGGATTATTGTAATCGTCAAGGATTGTGCAGTGTTCTGTTAGATATGAGAGGGAATTTCAGTGAATATCAAGAGCTTGTTAAAGAGGATATTAGGAAGAAGTATATCAATAAATTTTCTTGTCAAATTCATCTCTCTTTTTCTTCTCCCTCCCACACCACCACCCTCCAAAGCAACAACATCGTCTTCCAGTATTCTCTCAACGCTTATCTAAATTTCATTAGAGGTGACGATGAAGCCATCTCCGAACTCGACCACGAAATCCGCACCAAGATTCTCCGTGAGAAGTCTAACGCTGACAACACCCTTGCTGCCGCTGAACAAAAGGTCTCTGAATTGGAGGCTCAATTGGAGGGATTGAGGTCTGCTCCTTCTCAGAAGGATTTACTCGACAAAGAGAAGGAAATGCTTCAAGGCGATGTCATTAAGTTTCACAAGATTATTGACGAGTTTGGGTTGCGGATTGAGTTGAAAGAGAGGGATTTGAGGCCAGAGAATAAGCTTGGAGATGATGAAACGTGGGATAGGGCTGAAAGTGCTCTCAAGGAGGCTTTGGATGAGTGTGGCAAAGGGAATGTGTTTGTTAAGAACTTAGCGAAATCGATAGATAATGTGGGACTGCATGATTTATTTCAAGAATATGGGAATATTTTGTCTAGCAAAATTGTCATCTCTGAAGATGGGAAGAGCAAAGGGTTTGGTTATATACAGTTTGGTTCAGAGGAGTCTGCAAATGATGCTATCCAGAAAATGAATGGCTCTACTGTGAGAGATAAATATGTTGGGAAATTTATCAGAAAAAGTGAGCGCTCTTTGCCTGAACCTGATGCCAAATATACAAACTTGTACGTTAAGAATTTGGACCCAGATATTACCGAAGCACTTCTTAAAGAAAAGTTCTCATCTTTTGGAAAAATTCTTAGCTTGGCTATTGTAAAGGATGAGAAGGGGTTGTCAAAAGGTTTTGGATTTATGAACTATGAAAACCCGGATGATGCAAGACGAGCAACAGAAGCAATGAATGGATCACAATTTGGTTCAAAGAACCTGTATGTTGCAAGAGCACAAAAAAAGGTTGAACGTGAAAAGATCTTGCATCAGTGGTTTGCAGAAAGATGCATGGAGAAAAACTTGAAATACAAGGGATCAAACATTTATGTGAAGAACATTGATGATAGTGTTAGTGACGAAGAACTAAAGAGTCAGTTTGTGCAAATCAACAAAGAGAATCGCAAGCAGCTTCCTTATCAAATTACAGGCATGGTTAAACCATCCAAGCTTTTAACATGCTTCCAGTGGGGTGCCTTGATGGTGGCAGGTCTGTGCAGAGGAAAGATGTTAGGCAAAGCCTATTGCAGCTCCAGCATTCACACTGGTGTTGTTTATCATCACCCTAAGGGTTCTACAACATTTTATCATCATTCATCGGGTTCTATTGGATTGGAATCACCCGCTGATGGTAGACGTTCATCTGAGTCTAGCTACCGTATTGGAGATAATGGAACTTCAGGGGGGACAAATTAG 2538 0.409 MQAMGLSVAVSVPFYHSRLCINASPHPPIPLNLNHGFSKSLTFRDRLTRGKSSYIIRSQKNRDDDGDVDGFYMRKSVELARKALGCTSPNPLVGCVIVKDGQIVGQGFHPKPGQPHAEVFALRDAADLDENATAYVTLEPCNHFGRTPPCTEVLIKARLKKVVVGMVDPNPIVASKGLDRLRGAGIEVVVGVEEELCKGLNEGYIHHMLTQKPLLTLRYSLSVNGKLLDSLGNGVTHSGGYYSRLLQEYDAVILSSSLFRETLSVDSVPSSQEPGANQPIRFIMHRDPGSGSSNQIPFIIDNVTDKMIIFTDCITTAPEETQQGIKTVSVDQINLDVILDYCNRQGLCSVLLDMRGNFSEYQELVKEDIRKKYINKFSCQIHLSFSSPSHTTTLQSNNIVFQYSLNAYLNFIRGDDEAISELDHEIRTKILREKSNADNTLAAAEQKVSELEAQLEGLRSAPSQKDLLDKEKEMLQGDVIKFHKIIDEFGLRIELKERDLRPENKLGDDETWDRAESALKEALDECGKGNVFVKNLAKSIDNVGLHDLFQEYGNILSSKIVISEDGKSKGFGYIQFGSEESANDAIQKMNGSTVRDKYVGKFIRKSERSLPEPDAKYTNLYVKNLDPDITEALLKEKFSSFGKILSLAIVKDEKGLSKGFGFMNYENPDDARRATEAMNGSQFGSKNLYVARAQKKVEREKILHQWFAERCMEKNLKYKGSNIYVKNIDDSVSDEELKSQFVQINKENRKQLPYQITGMVKPSKLLTCFQWGALMVAGLCRGKMLGKAYCSSSIHTGVVYHHPKGSTTFYHHSSGSIGLESPADGRRSSESSYRIGDNGTSGGTN 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04348 845 Gene3D - 529 602 IPR012677 -
Vifa2g04348 845 CDD Riboflavin_deaminase-reductase 73 185 - -
Vifa2g04348 845 Gene3D - 603 710 IPR012677 -
Vifa2g04348 845 SUPERFAMILY RNA-binding domain, RBD 617 749 IPR035979 GO:0003676
Vifa2g04348 845 Gene3D - 391 501 - -
Vifa2g04348 845 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 618 695 IPR000504 GO:0003723
Vifa2g04348 845 MobiDBLite consensus disorder prediction 825 845 - -
Vifa2g04348 845 FunFam Riboflavin biosynthesis protein RibD 67 206 - -
Vifa2g04348 845 NCBIfam bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD 73 359 IPR004794 GO:0008835|GO:0009231
Vifa2g04348 845 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 116 154 IPR016192 GO:0008270|GO:0016787
Vifa2g04348 845 Coils Coil 427 461 - -
Vifa2g04348 845 SUPERFAMILY Cytidine deaminase-like 69 208 IPR016193 GO:0003824
Vifa2g04348 845 SUPERFAMILY RNA-binding domain, RBD 528 598 IPR035979 GO:0003676
Vifa2g04348 845 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 529 604 IPR000504 GO:0003723
Vifa2g04348 845 MobiDBLite consensus disorder prediction 818 845 - -
Vifa2g04348 845 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 71 166 IPR002125 -
Vifa2g04348 845 SMART rrm1_1 619 691 IPR000504 GO:0003723
Vifa2g04348 845 SMART rrm1_1 530 602 IPR000504 GO:0003723
Vifa2g04348 845 CDD RRM3_I_PABPs 617 696 - -
Vifa2g04348 845 Gene3D Cytidine Deaminase, domain 2 58 207 - -
Vifa2g04348 845 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 67 189 IPR002125 -
Vifa2g04348 845 PANTHER RNA BINDING PROTEIN 472 743 - -
Vifa2g04348 845 FunFam Polyadenylate-binding protein 609 703 - -
Vifa2g04348 845 Gene3D Dihydrofolate Reductase, subunit A 208 356 IPR024072 -
Vifa2g04348 845 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 620 688 IPR000504 GO:0003723
Vifa2g04348 845 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 531 598 IPR000504 GO:0003723
Vifa2g04348 845 FunFam Poly(A) binding protein cytoplasmic 1 like 521 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04348 Vifa-Chr2 1279227172 1279232170 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04348 529 746 Eukaryotic Initiation Factors Gene Family AT2G36660 31.532 5.72e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04348 K11752 - gmx:100786393 479.944