Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04340 ATGATTAGAGGATATCCTTCTAAGCTTCAAATTTTATCTTCTTCAAGGATCCCACAAAGACATTTTTTGACAAAACAAAGGACTTGTGGGGTTGAATTGAAAAGTATGAGGTCATGGCATAAGGAATGGTACCATATATTCATGTTGATCAAGGCCATTTTTGTTCTCATCATCATTCAAACACTTGACCTATCTATTGGGCTTCTTCGCAATCTTAAGTGGCTTAATCTTGAGAGTTCAAGACTTGAGTATCTTCCAAAGGAGTTACCTAGCCTAACATCTATTAAGGAGCTTAGGATTTCTGGCAGTGGACCAAAAGTTAAGAAACAGCAGCTACATGTCTTGTTTGATGGCCTACGATCTCTACAAATACTACATTTGAAGGATTGTAATAACTTGTTTGAACTCCCTGACAACATCAGTGTCCTATCAAAATTACAAGAACTAATTCTAAATGGAAGTAACGTGAAAAGGTTGCCGGAAAGCATCAGGAATCTTCAAGGGCTGGAAATTCTGTCATTGGAGGAATGCAGGGAGATTCGAGACAGCCTGAATTTGGATGGGCGTTCACTCAAACATATAATGGAAAGTCTAAATTTAACAATGATGAGCGCTACATTTCAAAATGTGTCTGTTAGAAGACTTCGCGTGGATGTTCACAGCTACAACTATACCAGTGTTGATGCTTGTCTACCAGGAACAAGAGTCCCACAAGCATTATACAAGAATCAGATTCAGAGATGGTTGAACCAGAGACAAATTCTTATTGGGAAGTCAAGGGTTTCGAAAGGGGCATGGATCTATATTTTAAGAGACATGATGGGCAAGCTGTAA 834 0.3873 MIRGYPSKLQILSSSRIPQRHFLTKQRTCGVELKSMRSWHKEWYHIFMLIKAIFVLIIIQTLDLSIGLLRNLKWLNLESSRLEYLPKELPSLTSIKELRISGSGPKVKKQQLHVLFDGLRSLQILHLKDCNNLFELPDNISVLSKLQELILNGSNVKRLPESIRNLQGLEILSLEECREIRDSLNLDGRSLKHIMESLNLTMMSATFQNVSVRRLRVDVHSYNYTSVDACLPGTRVPQALYKNQIQRWLNQRQILIGKSRVSKGAWIYILRDMMGKL 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04340 277 SUPERFAMILY RNI-like 48 194 - -
Vifa2g04340 277 SMART LRR_typ_2 119 142 IPR003591 -
Vifa2g04340 277 SMART LRR_typ_2 69 92 IPR003591 -
Vifa2g04340 277 SMART LRR_typ_2 143 166 IPR003591 -
Vifa2g04340 277 Gene3D Ribonuclease Inhibitor 27 218 IPR032675 -
Vifa2g04340 277 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 114 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04340 Vifa-Chr2 1278267875 1278269165 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04340 119 201 WRKY Transcription Factor Family AT4G12020 36.145 9.12e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04340 - - cam:101515491 254.988