Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04334 ATGCTCATAAAGCCGACCCCAAATGCGAAACGGAATGTTATTGTTGTTGTTTCACAGACATTCTTTACTATTCTCTGCAATATTGCTTTACAGAGGAAAAGTGGGGAATATGCAGATCTAAAATTTGAAACAAATCCGCATCCTAAAGATAACACACAGAAAGACGGATGTGTTTATGTTGATGCATATGCGGAAGAAGATACTAAGGTTGATGCTGAAACAAGTCTTCCTCTTGAAGATAACACAAGGAAAGATAAAGGTGTCATGTTGACGTACACGACGAAGATAATAAGGTTGATGCTGAAGAATCAAGAAGATACTTGGAGGGAGATGTTTATGGCACTAGAAACTTCTAAAGATGTTTCTGCAGATCATCCACTTGGAGAAGAAGAAAAAAAGAAGCTGACTGTGATCACTCTTTTAGGAATTGAAACCATATTTGAGTTCCAATACAAGGTTAAAAGGAGCACAAGAACTTACATGTTTGAATCCTGGAATGGCAAAGCAAAAGATGATTTATTTAAAGCTAAGATTGCTGAAGATGATCTCACGGTAATTGAAATTTCAGCACATCCTAGGCATGCAAATCTAATGAAACTAGTGGGGGACCATCCTGGAGGATGCATTTTGGCTCATGCTCCAGGATCTGGAAAGACTTTCATGGTTATTAGTTTCATACAGAGTTTTCTAGGAAAGTATCCCAATGCAAGGCCTCTAGTGGTGCTTCCTAAGGGAATACTATCGACTTGGAAAAAAGAATTTCAGAGATGGCAAGTGGAAGATGTACCACTCTATGACTTTTACACTGTGATGGCTGAGAGTAGATCACAACAATTGGAAGTCTTAAAACAATGGGTGGATCACAAGAATGAGGGACACACTCCTAGGAACGAGAATACTGATATGGTACAGTCCCTTGCAAAAGTACAAACACCAAGTAAAGTTGTACTATCTGGAACCCTATATCAAAATCATGTCAAGGAGGTATTCAACGTGTTGAACCTTGTTCGCCCAAAGTTTAAATCGATGGAAACGTCCAAGCCTATTGTCCGACGCATTAAGAGTAGGATCCATATACCTGGTGTGAGTGACTTTTGTGATTTGGTTGAAAACACTTTGCAGAAGGACCCGGATTTTAAAAGGAAAGTGGATGTTATACATGATTTGCGGGAGATGACCAGTAAGGTACTGCACTACTATAAAGGAGATTTTCTTGATGAGCTTCCTGGCCTAGTAGATTTTACTGTGGTGCTCAAACTTACACCTAGACAGATGCATGAACTTGATAAAGTAAAGGGGATATCTGGAAAGTTCAAGATGTCTTCTGTAGGTAGTGCAGTATATCTGCACCAAAAATTGAAACCAATTGCAGAGAAATGGTGTGAAAAATCTATATCTGGTGATATAATTGATGATCTAATACGAACCTAG 1431 0.3885 MLIKPTPNAKRNVIVVVSQTFFTILCNIALQRKSGEYADLKFETNPHPKDNTQKDGCVYVDAYAEEDTKVDAETSLPLEDNTRKDKGVMLTYTTKIIRLMLKNQEDTWREMFMALETSKDVSADHPLGEEEKKKLTVITLLGIETIFEFQYKVKRSTRTYMFESWNGKAKDDLFKAKIAEDDLTVIEISAHPRHANLMKLVGDHPGGCILAHAPGSGKTFMVISFIQSFLGKYPNARPLVVLPKGILSTWKKEFQRWQVEDVPLYDFYTVMAESRSQQLEVLKQWVDHKNEGHTPRNENTDMVQSLAKVQTPSKVVLSGTLYQNHVKEVFNVLNLVRPKFKSMETSKPIVRRIKSRIHIPGVSDFCDLVENTLQKDPDFKRKVDVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLKLTPRQMHELDKVKGISGKFKMSSVGSAVYLHQKLKPIAEKWCEKSISGDIIDDLIRT 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04334 476 Pfam SNF2-related domain 274 429 IPR000330 GO:0005524|GO:0140658
Vifa2g04334 476 Gene3D - 193 289 IPR038718 -
Vifa2g04334 476 Gene3D - 290 359 IPR038718 -
Vifa2g04334 476 Pfam SNF2-related domain 205 259 IPR000330 GO:0005524|GO:0140658
Vifa2g04334 476 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 291 458 IPR044567 GO:0080188
Vifa2g04334 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 363 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04334 Vifa-Chr2 1277449164 1277451801 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa2g04334 SNF2_N 1.2e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04334 K10875 - gmx:100780454 535.028