Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04323 ATGGCTCACTTCTTTAGACTCATACTTCTTGTTTTCATCACAAATATATCACATGCTATCACTACAAACCAAACTCAGTTTTTTTCTGTCATGAAAGACTCTCTTTCAGGAAACTATCCTTTTGATTGGGGCGCAAGCAAGGTCGAAAAACCAGTATGTGATTTCACCGGAATCACCTGCGATGACAAAGGCGATATTATAAAACTCGATTTTTCAGGTTGGTCTTCTCTTTCGGGAAACTTCCCTATAGACTTTTGTACTTACCTTCCAAGTTTACGCGTCCTAAACCTCGGTAACACAAAACTCAAGTTTCCAATAAACAGCATAACCAACTGTTCTAAATTAGAAGAATTGATCATGAATCAGATGCACCAGTCAGGAACACTTCCGGATTTCTCGTCTTTAAAATCTCTCAGAATCGTCGACTTATCATACAACTCCTTCACCGGGGACTTCCCTATGTCAGTTTTCAATCTCACAGACCTCGAAATTCTCAACTTCAATGAAAACAGTGGTTTCAATCTATGGGAATTACCAAAAAGCTTTGAAAGATTGAAAAATCTCAAGTCAATGGTTTTATCAACATGCATGCTGCATGGTCAAATTCCACCATCCATATCAAACATAACAACTCTCATTGATCTTGAACTAAGTGGAAATTTCTTGACAGGTCAAATTCCAAAAGAACTTGGTTTGTTGAAAAACTTGCAACAGCTTGAACTATACTATAACTACCACCTAGTTGGTAACGTTCCAGAAGAGCTAGGAAACTTAACCGAACTAATCGATTTGGATATATCGGTAAACAAGCTAACCGGAACAATCCCTTCTTCTGTTTGTAAACTTCCTAAGCTTCAAGTTCTTCAGCTGTACAACAACAGTCTCACAGGTCAAATACCAGATGAAATTGAAACCTCAACAACACTGAGAATGTTGTCTCTTTACGACAATTTCTTAAGCGGACACATTCCGAAGAAACTAGGCCAGTTCTCAGGAATGGTTCTTGTTGATTTGTCTGAAAACAAATTGTCTGGTCCTTTACCAGAACATGTCTGCGAAGGAGGTAAACTGTTATATTTTCTTGTTTTGGACAACTTTTTATCTGGTTTTATACCAGAAAGTTACGCGAACTGCGTGTTTCTGTTACGCTTTCGGGTGAGTAATAACCGTTTACAAGGTTCAGTTCCAAAAGGACTATTGAGTTTACCTCATGTTTCAATCATTGATTTGAGTAGTAACAATTTAACCGGTCCAATTCCGGAGATCAACGGAAACTCTAGAAACCTGTCTGAACTTTTCCTTCAGAGGAACAAGATATCAGGAGAGATAACACCAACAATCTCTAGAGCTTATAGCCTTGTCAAAATTGATTTCAGTTATAACTTTCTATATGGTCCAATCCCTTCTGAGATTGGTAACCTTAGAAAGCTTAACTTGCTTATGCTGCAAGGTAACAAGTTGAACTCTTGTATTCCTGGTTCACTTTCTTCTTTGTATTCACTCAACCTTCTTGATCTTTCCAATAATCTCTTAACCGGAAACATCCCCGAAAGTTTATCCGTCTTGTTGCCGAATTCGATTAACTTCTCACACAATCTTCTTTCTGGTCCAATTCCTCCTAAACTGATTAAAGGAGGTTTAGTTGAAAGCTTTGCAGGAAATCCTGGTTTATGCGTGGTGATTCCGGTGTCTGCGAATTCATCTGATCAAAAAAACTTTCCATTATGTTCACATGGTTACAAGAGTAAGAAGATGAACACCATCTGGGTAGCTGGTGTGTCTGTGATATTGATTTTTGTAGGTGCTGCTTTGTTCTTGAAGAAAAGATGCAGCAAAGACGCGGCTGCGGTTGATCACGAAGACACGCTCTCTTCATCCTTTTTCTCTTATGATGTCAAGAGCTTTCACATGATTAGCTTTGATCAAAGAGAGATTGTTGAGTCTTTGGTTGATAAGAACATTATGGGACATGGAGGGTCAGGGACAGTCTACAAAATCGAGCTCAAGAGTGGCGATGCTGTCGCGGTTAAACGCCTTTGGAGCCGAAGCTCGAAGGACTCGTCGCCCGAAGACGCGTTATTTGTGGACAAAGCATTGAAAGCTGAGGTGGAAACTCTTGGAAGCATAAGGCACAAGAATATAGGTTGGATTCATTTGGATTGGCCTACAAGGCATAGGATTGCACTTGGAATTGCTCAAGATTATCATCCTAAGGTTGCTGATTTTGGAATTGCTAAGGTTTTGCAAGCAAGAAGTGGAAAGGATTCCACAACTACTGTTATTGCAGGAACTTATGGTTACCTAGCACCAGAATATGCATATTCACCAAGGGCCACAACAAAGTGTGATGTGTACAGTTTTGGAGTGATTTTGATGGAACTGTTAACTGGGAGAAAGCCAATAGAGTCAGAGTTTGGAGAAAACAGAAACATTGTATTTTGGGTTTCAAACAAAGTTGAAGGCAAAGAAGGAGCTAGACCAAGTGAAGTTTTTGATCCAAAGCTATCATGTTCATTCAAAGATGACATGGTTAAAGTTTTGAGAATTGCGATCCGATGCAGTTACAAAGCACCAGCTAGTAGACCAACCATGAAAGAGGTTGTTCAGCTTCTGATTCAGGCAGAACCTAAAACTTCTGATTCTTGCAAGTTGTCAACTAAAGAAGTAAAGAAACCATTTGAGTTATAG 2688 0.3932 MAHFFRLILLVFITNISHAITTNQTQFFSVMKDSLSGNYPFDWGASKVEKPVCDFTGITCDDKGDIIKLDFSGWSSLSGNFPIDFCTYLPSLRVLNLGNTKLKFPINSITNCSKLEELIMNQMHQSGTLPDFSSLKSLRIVDLSYNSFTGDFPMSVFNLTDLEILNFNENSGFNLWELPKSFERLKNLKSMVLSTCMLHGQIPPSISNITTLIDLELSGNFLTGQIPKELGLLKNLQQLELYYNYHLVGNVPEELGNLTELIDLDISVNKLTGTIPSSVCKLPKLQVLQLYNNSLTGQIPDEIETSTTLRMLSLYDNFLSGHIPKKLGQFSGMVLVDLSENKLSGPLPEHVCEGGKLLYFLVLDNFLSGFIPESYANCVFLLRFRVSNNRLQGSVPKGLLSLPHVSIIDLSSNNLTGPIPEINGNSRNLSELFLQRNKISGEITPTISRAYSLVKIDFSYNFLYGPIPSEIGNLRKLNLLMLQGNKLNSCIPGSLSSLYSLNLLDLSNNLLTGNIPESLSVLLPNSINFSHNLLSGPIPPKLIKGGLVESFAGNPGLCVVIPVSANSSDQKNFPLCSHGYKSKKMNTIWVAGVSVILIFVGAALFLKKRCSKDAAAVDHEDTLSSSFFSYDVKSFHMISFDQREIVESLVDKNIMGHGGSGTVYKIELKSGDAVAVKRLWSRSSKDSSPEDALFVDKALKAEVETLGSIRHKNIGWIHLDWPTRHRIALGIAQDYHPKVADFGIAKVLQARSGKDSTTTVIAGTYGYLAPEYAYSPRATTKCDVYSFGVILMELLTGRKPIESEFGENRNIVFWVSNKVEGKEGARPSEVFDPKLSCSFKDDMVKVLRIAIRCSYKAPASRPTMKEVVQLLIQAEPKTSDSCKLSTKEVKKPFEL 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04323 895 Gene3D Ribonuclease Inhibitor 24 172 IPR032675 -
Vifa2g04323 895 Gene3D Ribonuclease Inhibitor 249 354 IPR032675 -
Vifa2g04323 895 Gene3D Ribonuclease Inhibitor 173 248 IPR032675 -
Vifa2g04323 895 SUPERFAMILY Protein kinase-like (PK-like) 635 869 IPR011009 -
Vifa2g04323 895 Gene3D Phosphorylase Kinase; domain 1 610 712 - -
Vifa2g04323 895 Gene3D Ribonuclease Inhibitor 355 569 IPR032675 -
Vifa2g04323 895 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 24 221 - -
Vifa2g04323 895 Pfam Protein kinase domain 733 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04323 895 Gene3D Transferase(Phosphotransferase) domain 1 713 892 - -
Vifa2g04323 895 ProSiteProfiles Protein kinase domain profile. 582 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04323 895 SUPERFAMILY RNI-like 67 345 - -
Vifa2g04323 895 FunFam Receptor protein-tyrosine kinase CEPR1 282 569 - -
Vifa2g04323 895 FunFam Leucine-rich repeat receptor-like protein kinase 175 278 - -
Vifa2g04323 895 SUPERFAMILY L domain-like 251 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04323 Vifa-Chr2 1274405770 1274408707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04323 21 877 Receptor kinase-like Gene Family AT5G49660 58.542 0.0 1054
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa2g04323 Pkinase 6.4e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04323 - - gmx:100808284 1396.33