Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04322 ATGTTTACCACCAAACTCCTCTCTCTTCTTCTTCTCTTGTCATTCTTCTCACTCTCCACACATGCCGCCAATTCAAGCGAACTCGAAATTCTCCTAAACATAAAATCCTCATTTTCAAACTCCAACTCCAAACCCTTGTTCAACTCATGGAATCCCAACAATTCCATTTGCAGTTTCTATGGAATCACCTGCAACTCAGTCAACTCCGTCGCAGAAATAAACCTCTCCCACAGAAACCTCACCGGAACTCTCCCTCTACACTCCCTCTGCAACCTTCCCTCCCTCACCAAACTCGTCTTCAGCTTCAACCTTCTTCATGGCAGACTCAATCAAACCCTTCTAAACTGCGTCAAACTAGAGTTCTTAGATTTAGGAAACAACTTCTTCAACGGAGCTTTCCCAGATATTTCACCTCTCAATAAACTTCAATATCTTTACGTTAACAAAAGTGGTTTCTCTGGAACTTTTCCTTGGCAATCTCTGTTAAACATGACGGGTCTGTTACAGTTAAGCGTGGGAGATAACGCGTTCGATCTAACGCCGTTTCCTAAAGAAGTCTTAACTCTCAAGAAACTTAACTGGCTTTACATGAGTAACTGTAACATAGGAGGAAATTTACCGGTTGGAATCGGTAACTTGACGGAGTTAACCGAGTTAGAATTCTCTGATAATTTCATCACGGGGGAGCTTCCTGGAGATATAGTCAATCTTCGAAAACTCTGGCAGCTTGAATTCTACAATAATTCATTATCCGGAGAGCTTCCGGTCGGGTTGAGAAACTTAACCCAACTCATAAACTTCGATGGATCAATGAATCAGTTAGAAGGAAATCTCTCCGAGATAAGATTCTTAACTAATCTTGTTTCACTTCAATTCTTTGAAAACAAATTCTCCGGCGAGATTCCGGCAGAGTTAGGCGAGTTCAAACGTCTTAACGCTCTGTCACTTTATAGAAACAGATTAACAGGTCCGATTCCTCAGAATATCGGTTCGTGGACAAAGTTTAGATACATAGACGTTTCGGAGAATTTCTTGACAGGTTCTATTCCTCCGGATATGTGTAGCAAAGGAAACATGACAGAGCTTCTTTTGCTTCAGAATAATCTCACCGGAGAGATACCGCAAACATACGGTAACTGTTTAACTTTGAAACGATTCAGAGTGAGTCGAAACTCTCTTTCTGGTATTGTTCCTTCGAGTATCTGGGGATTACCTAAAGTTGAAATTATTGATATTGAAATGAATCAGTTAGAAGGTTCTGTAAGTTCTGATATCCAGAATGCAAAAAAATTGACAAGTATTTTCGCAAGGAGTAATCGGTTATCCGGTGAAATACCGGAAGAGATTGTGAAAGCGACTTCGTTGGTGACAATTGATCTTAGCGAGAATCAAATTTCAAGGAACATTCCAGAAGGAATTGGTGAGCTTAAGCAGCTTGGGAACCTTCATCTGCAAGGTAACAAGTTATCCGGGATAATTCCAGAATCTTTGGGTAGTTGTAACTCTTTAAATGATGTTGATCTATCGCGAAATTTACTTTCGGACGAAATTCCTTCGTCGTTGGGTCTGTTACCGGCTTTGAATTCATTGAATTTCTCTAGCAATGAACTTTCCGGTGAGATACCGGAGAGGTTAGGTTCGCTTAAGTTGAGTCTCTTTGATCTTTCGCATAATAGATTATCCGGTGAAATTCCACAGGGTTTGACAATTCAGGCCTACAATGGAAGTCTCGCCGGAAACCCGGGTTTATGCACTCTCGATGGTATTGGTTCCTTCCGGCGTTGCTCAGAGAGTGGTGGAATATCGAAAGACGTTCGTGCTCTTGTACTTTGTTTTACAATAGGTTTGGTTTTGGTTCTTTCTTTTGTGGGTGTTTATCTGAAATTGAGGAGAATGAAGGAAAAAGAGATGAAAGGAGAGGGAAGAAAATATGGAAGGGAACGTTCTTTGAAGGAAGAATCGTGGGATGTGAAATCCTTCCATGTGATGAGTTTCAGTGAAGATGAGATTCTTGATTCTATAAAGCAAGAGAATCTAATAGGAAAAGGAGGTTCAGGGAATGTTTATAGAGTCACACTCGCAAATGGAAAAGAACTCGCGGTTAAGCATATATGGAACACTGATTTCAGTTCTAGGAAAAAGTCATGGAGTAGTACTCCGATGCTGGCGAAGCGCGGAGGTGGTGGAGGTTCAAAGTCGAGGGAGTTCGACGCAGAGGTTCAGTCGTTGAGTTCGATAAGGCACGTCAATGTGGTGAAACTTTACTGCAGTATAACGAGCGAGGACTCGAGTTTATTGGTGTACGAGTATTTGCCGAATGGGAGTTTGTGGGATAGGCTTCATACTAATGAGAAGATGGAGCTTGATTGGGAAACAAGATATGAAATTGCTATTGGTGCTGCTAAAGGGTTGGAGTATTTGCATCATGGGTGTGAAAGGCCTGTGATTCATAGAGATGTTAAGTCTAGTAACATTTTGTTGGATGAGTTTTTGAAACCTAGGATTGCTGATTTTGGTCTTGCTAAGATTGTTCATGCCAATGTTGTTAAGGATTCTACTCATATCATCGCCGGAACTCACGGCTACATCGCTCCCGAATATGGTTACACATACAGAGTGAATGAGAAAAGTGATGTGTATAGTTTCGGAGTCGTGTTGATGGAGCTAGTAACTGGTAAAAGGCCAAGTGAGACAGAGTTCGGAGAAAACAAGGATATAGTTAGTTGGGTTCATGGGAAGACAAGGAGTAAGGAAAAGTTTATGAGTGTGGTGGATTCGAGAATTCCGGAGATGTATAAAGAGGAAGCTTGTAAGGTTTTGAGAACTGCAGTTCTTTGCACTGCAACTCTTCCTGCTTTGAGACCAAGTATGAGAAGTGTGGTTCAACAGCTTGAGGATGCTGCACCTTGTAAATTGGTTGGAATTGTTATTGGCAAACATGGAAGTGAAAAGAAATTTGGAGTCAATGACAAATGA 2976 0.413 MFTTKLLSLLLLLSFFSLSTHAANSSELEILLNIKSSFSNSNSKPLFNSWNPNNSICSFYGITCNSVNSVAEINLSHRNLTGTLPLHSLCNLPSLTKLVFSFNLLHGRLNQTLLNCVKLEFLDLGNNFFNGAFPDISPLNKLQYLYVNKSGFSGTFPWQSLLNMTGLLQLSVGDNAFDLTPFPKEVLTLKKLNWLYMSNCNIGGNLPVGIGNLTELTELEFSDNFITGELPGDIVNLRKLWQLEFYNNSLSGELPVGLRNLTQLINFDGSMNQLEGNLSEIRFLTNLVSLQFFENKFSGEIPAELGEFKRLNALSLYRNRLTGPIPQNIGSWTKFRYIDVSENFLTGSIPPDMCSKGNMTELLLLQNNLTGEIPQTYGNCLTLKRFRVSRNSLSGIVPSSIWGLPKVEIIDIEMNQLEGSVSSDIQNAKKLTSIFARSNRLSGEIPEEIVKATSLVTIDLSENQISRNIPEGIGELKQLGNLHLQGNKLSGIIPESLGSCNSLNDVDLSRNLLSDEIPSSLGLLPALNSLNFSSNELSGEIPERLGSLKLSLFDLSHNRLSGEIPQGLTIQAYNGSLAGNPGLCTLDGIGSFRRCSESGGISKDVRALVLCFTIGLVLVLSFVGVYLKLRRMKEKEMKGEGRKYGRERSLKEESWDVKSFHVMSFSEDEILDSIKQENLIGKGGSGNVYRVTLANGKELAVKHIWNTDFSSRKKSWSSTPMLAKRGGGGGSKSREFDAEVQSLSSIRHVNVVKLYCSITSEDSSLLVYEYLPNGSLWDRLHTNEKMELDWETRYEIAIGAAKGLEYLHHGCERPVIHRDVKSSNILLDEFLKPRIADFGLAKIVHANVVKDSTHIIAGTHGYIAPEYGYTYRVNEKSDVYSFGVVLMELVTGKRPSETEFGENKDIVSWVHGKTRSKEKFMSVVDSRIPEMYKEEACKVLRTAVLCTATLPALRPSMRSVVQQLEDAAPCKLVGIVIGKHGSEKKFGVNDK 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04322 991 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 771 977 - -
Vifa2g04322 991 Gene3D Ribonuclease Inhibitor 283 352 IPR032675 -
Vifa2g04322 991 SMART serkin_6 674 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04322 991 Gene3D Transferase(Phosphotransferase) domain 1 771 971 - -
Vifa2g04322 991 Gene3D Ribonuclease Inhibitor 180 282 IPR032675 -
Vifa2g04322 991 Gene3D Ribonuclease Inhibitor 24 179 IPR032675 -
Vifa2g04322 991 ProSitePatterns Protein kinases ATP-binding region signature. 680 702 IPR017441 GO:0005524
Vifa2g04322 991 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 470 590 - -
Vifa2g04322 991 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 210 965 - -
Vifa2g04322 991 Pfam Protein kinase domain 676 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04322 991 Gene3D Ribonuclease Inhibitor 353 599 IPR032675 -
Vifa2g04322 991 ProSiteProfiles Protein kinase domain profile. 674 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g04322 991 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Vifa2g04322 991 SUPERFAMILY RNI-like 280 587 - -
Vifa2g04322 991 FunFam Receptor-like protein kinase 7 109 355 - -
Vifa2g04322 991 CDD STKc_IRAK 680 965 - -
Vifa2g04322 991 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 356 445 - -
Vifa2g04322 991 Gene3D Phosphorylase Kinase; domain 1 657 770 - -
Vifa2g04322 991 SUPERFAMILY Protein kinase-like (PK-like) 665 964 IPR011009 -
Vifa2g04322 991 SUPERFAMILY L domain-like 49 326 - -
Vifa2g04322 991 ProSitePatterns Serine/Threonine protein kinases active-site signature. 815 827 IPR008271 GO:0004672|GO:0006468
Vifa2g04322 991 FunFam Receptor-like protein kinase HAIKU2 657 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04322 Vifa-Chr2 1273068738 1273071793 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04322 7 984 Receptor kinase-like Gene Family AT1G09970 59.003 0.0 1120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa2g04322 Pkinase 5.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04322 - - gmx:100809356 1490.32