Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04318 ATGCCGAATCCCGAATCTTCCCGTCAATCCAACCGCCAATCGCACCGCTCCAAAACTCGACCGTCGTCTTCCGCCGTTCGGTCCAAACCTCGGCCCAAAGACAGAGTCCCGCTCACGAAGCTACTCCGAGTAGCGTCAGTGGCCGGCGGGATTCAGTTCGGATGGGCTTTGCAGTTATCTCTTCTAACCCCCTATGTGCAGCAGCTCGGGATTCCGCATGCGTGGGCGAGTATTATATGGTTATGTGGACCGCTTTCCGGGCTTATTGTTCAGCCGTTGGTTGGGCATTTGAGTGATCGGTGTACGAGTCGATTTGGAAGGAGGAGACCGTTTATCTTAGCCGGAGCTATTTCGATTGCTTTGTCTGTGCTCATCATTGGTCATGCGGCGGATTTGGGATGGAAGTTTGGTGATACGGAGGAGCATCGCCGATCCGCGGTCGCGTTTTTTGTTTTCGGGTTTTGGATTTTGGATGTTGCTAATAATGTCACTCAAGGTCCTTGTAGAGCTTTGCTCGGTGATCTAACCGGTAAGGATCATCGAAGGACACGAGTTGCAAATGCTTATTTTTCCCTATTTATGGCTATTGGTAACATTCTTGGATATGCAACTGGAGCATACAGTGGTTGGTACAAGGTCTTTCCTTTCACACTTACCCCTGCATGCAATATCAGTTGTGCAAATCTCAAGTCTGCTTTCTTTCTGGACATTGGTTTCATGCTCATCACCACCTACATCAGTATCATGGCAGCTAAAGAAGTGCCTCTTGGGTCAAGTGGGGCACCCGATGCCGAAGCAGAAGGGGAGTCAGGTGGTAGTGCGGAAGAAGCTTTTTTATGGGAACTATTTGGGACATTCAAATATTTTTCAAAGCCTATATGGGTAGTATTGTCTGTTACTGCTCTAACATGGGTTGGATGGTTTCCATTTCTTCTATTTGATACTGATTGGATGGGCCGAGAAATTTATGGCGGTGAGCCAAACGAAGGCCCTAATTATGGTTCTGGAGTGAGAATGGGGGCACTTGGTTTATTGCTTAATTCAGTTGTTCTTGGAGTAACATCATTACTCATGGAGAAGCTATGCAGGAAGCGGGGGGCTGGGTTTGTGTGGGGAATCTCAAATGTCCTAATGGCTGTATGCTTTATAGCAATGCTTGTATTAACCTACGTGGCAAAGAACATTGGTTATTTAGGAAAAGATCTACCACCCACTAGCATCGTGATATCTGCACTTACCATCTTCACTGTTCTCGGGTTTCCATTGGCAATCACTTACAGTGTTCCATATGCTTTAATTTCCACACATATTCAACCATTGGGGCTCGGCCAAGGATTGTCAATGGGAGTCCTAAATCTTGCAATAGTGTTCCCACAGATGATAGTGTCTTTAGGAAGTGGACCATGGGATCAGTTATTTGGCGGAGGAAACTCTCCGGCGTTTGCTGTGGCAGCTATTGCAGCTCTTATGAGTGGAGTCATAGCCGTCTTTGCTATTCCCCGAACTGGTTCGCAAAAGCCTAGAAGCCCAGTATGA 1536 0.472 MPNPESSRQSNRQSHRSKTRPSSSAVRSKPRPKDRVPLTKLLRVASVAGGIQFGWALQLSLLTPYVQQLGIPHAWASIIWLCGPLSGLIVQPLVGHLSDRCTSRFGRRRPFILAGAISIALSVLIIGHAADLGWKFGDTEEHRRSAVAFFVFGFWILDVANNVTQGPCRALLGDLTGKDHRRTRVANAYFSLFMAIGNILGYATGAYSGWYKVFPFTLTPACNISCANLKSAFFLDIGFMLITTYISIMAAKEVPLGSSGAPDAEAEGESGGSAEEAFLWELFGTFKYFSKPIWVVLSVTALTWVGWFPFLLFDTDWMGREIYGGEPNEGPNYGSGVRMGALGLLLNSVVLGVTSLLMEKLCRKRGAGFVWGISNVLMAVCFIAMLVLTYVAKNIGYLGKDLPPTSIVISALTIFTVLGFPLAITYSVPYALISTHIQPLGLGQGLSMGVLNLAIVFPQMIVSLGSGPWDQLFGGGNSPAFAVAAIAALMSGVIAVFAIPRTGSQKPRSPV 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04318 511 Gene3D MFS general substrate transporter like domains 290 506 IPR036259 -
Vifa2g04318 511 Gene3D MFS general substrate transporter like domains 39 256 IPR036259 -
Vifa2g04318 511 MobiDBLite consensus disorder prediction 1 26 - -
Vifa2g04318 511 NCBIfam sucrose/proton symporter 36 502 IPR005989 GO:0005886|GO:0008515|GO:0015770
Vifa2g04318 511 FunFam Sucrose transport protein 35 499 - -
Vifa2g04318 511 MobiDBLite consensus disorder prediction 1 33 - -
Vifa2g04318 511 Pfam MFS/sugar transport protein 56 202 - -
Vifa2g04318 511 SUPERFAMILY MFS general substrate transporter 36 504 IPR036259 -
Vifa2g04318 511 CDD MFS_SLC45_SUC 41 497 - -
Vifa2g04318 511 PANTHER SUGAR TRANSPORTER 35 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04318 Vifa-Chr2 1271485030 1271489349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04318 1 507 Sucrose Transporter Gene Family AT1G09960 66.863 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04318 K15378 - gmx:100787939 816.609