Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04308 ATGGGTACTGGATGGAGAAGAGCCTTTTGTACACGAGACCCTGAATCTACTATATCAGATAACAAGAATCGAAGCCAGAGTCAAAGCCAAAGCCCGAGCCCAAGCTCAAGAAGCTGTGCTCGGTTGAGTTTTCTCTCTGGAGGTAGTAGTAGTAATAGTTCTACTCCACGGTTGAATCAATCTCAACCAGCTTCAAGTCCAAGCCTGCGTTGTCGTACAATAACTGAAGCAGCTTCTCAAACCCATGATAGCCCCAGATTTCAAAGCAAAAGTAATACTCCAACTCCAAGAGCAAACTCGGTGTCCAATCCAAGTTCTCCTCGCTCTCCTTTGAAGTTATCTCTCTTCAAAAACAGCTTCAAATTTAGGAGTAGCTGCGGAATCTGTTTGAATAGTGTGAAAACGGGACAAGGAATGGCGATTTACACTGCAGAATGTGCACATGCTTTTCATTTCCCGTGTATAGCAGCACATGTACGCAACCATGCTACTCTTATTTGCCCTGTCTGCAACGCCACATGGAAGGACGTTCCATTACTAGCGGCGCATAAAAATCTTGCTGCTCAACAATCTCACACAACTAATGATAACTCTAATACAAGTGATGATTCAAAACAAAAGGAAAATCCTTCTTCAGTTTTCGGAACCAAGAACTCGAATCAGTCTCAACCGCAGCAGCAACAACAACATCAACAACTAAAGCAATCTGAATCAGCGCGATCTTATGACGACGATGAGCCTCTTCTTTCTTCTAGCGCCGGTGGTGGAAGGATTATCACTATTCCTGAAGTTGATGAAAACGTGGAAGATGATGACGATGACCACGACAACAACGGCGAGTTTCAAGGTTTTTTCGTTAACACCAACAAATCCTACTCCGACGATATACAATCCGGTGACGGAGATTCAAGAACTGTTCAGGTGAAGTTAATGCCGGAGTGTGCAGTTGTATCAGTTTCCAGAACGCACGAAACATACGCTTTGGTTCTAAAGGTGAAAGCGCCACCGCCGCTCCGCGGCGGAACCAACACTCTCGATCCTTCACGGCGAGCACCGATAGATCTCGTAACGGTGCTAGATATTGGTGGAAGCATGACCAGTGCAAAGCTTCACATGCTAAAGCGCGCGATGCGTTTGGTTATTTCCTCTCTAGGACCAGCTGATAGGCTTTCCATAGTGGCATTTTCTTCTATTTCCAAAAGGCTTTTCCCATTGAGAAGAATGACGGCTCAAGGTCAGCGAATGGCTCGACGCATCGTTGACCGGCTTGTCACCGGTGAAGGAAACGGCTTAGCCGAGGCTTTGAGAAAAGCAACAAGAGTATTAGAAGATCGTAGAGAAAGAAACCCGGTTTGTAGCGTCATGCTTTTATCCGACGGTCAAGATGAAAAGGTTCATAACTCTAGTAACAAACAAAATCAACGCAAGACATTTAGCCATGCATCCTCGACCCGGTTTGCTCACATTGAAATCCCGGTTCACGCGTTTGGGTTCGGTAGTAAAACCGGTTACAGTCACGAACCGGGAGAGGATGCATTTGCTAAATGTGTTGGTGGACTTTTGAGTGTGGTAGTTCAGGATTTGAGAATTCAATTGGGCTTTCAGTCTGATTCGGCCCGGGCTGAAATTAGTGCTATGTATTCCTGCAGTGGTAGGCCCACGCTGCTGAGCTTAGGAGCCGTACGGCTCGGCGATTTATATGCTGAAGAAGAAAGAGAACTATTGGTTGAAATGAGAGTTCCAGCTTTGGGTATGGGGCCCCGGGCCCACCATGTGATGACAGTACGGTGTCTTTATAAGGACCCCGCAAGTCAAGAGATAGTATACGGTAGAGAACAGGGACTTACAGTGCAGCTTCATCAGAATCATTCCCAAACCGTTCGATCATCGCAAACTAAGATCGAAAGGCTGAGGAATCTGTTCATAACTACCCGAGCCATAGCTGAGTCAAGGAGGCTTCTAGATCATAACAGTAACTTCACAAGCGCTCATCATTTACTTTCTTCAGCCCGTGCGCTTTTGATTCAATCTGGCTCGGCTTCAGCTGAACAGTATGTTCGCGGCTTGGAAGCTGAGCTTGCAGAACTTCATTGGAGGAGACAACAAGAACAGGTTCATGTTGAGGCTCAGCAGCAACAAGTGATGCAAAGAAGAAGAGGAGTTGAGAGAGAGATGAATTGTAATATGGTGGATGAAAACGGTGAGCCGCTTACACCTACATCGGCTTGGAGAGCGGCTGAGATGCTGGCTAAGATGGCTATGGTTAAGAAGTCTTTGAATAAAGTTAGCGACTTACACGGCTTCGAAAATGCTAGGTTTTAA 2322 0.4608 MGTGWRRAFCTRDPESTISDNKNRSQSQSQSPSPSSRSCARLSFLSGGSSSNSSTPRLNQSQPASSPSLRCRTITEAASQTHDSPRFQSKSNTPTPRANSVSNPSSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGMAIYTAECAHAFHFPCIAAHVRNHATLICPVCNATWKDVPLLAAHKNLAAQQSHTTNDNSNTSDDSKQKENPSSVFGTKNSNQSQPQQQQQHQQLKQSESARSYDDDEPLLSSSAGGGRIITIPEVDENVEDDDDDHDNNGEFQGFFVNTNKSYSDDIQSGDGDSRTVQVKLMPECAVVSVSRTHETYALVLKVKAPPPLRGGTNTLDPSRRAPIDLVTVLDIGGSMTSAKLHMLKRAMRLVISSLGPADRLSIVAFSSISKRLFPLRRMTAQGQRMARRIVDRLVTGEGNGLAEALRKATRVLEDRRERNPVCSVMLLSDGQDEKVHNSSNKQNQRKTFSHASSTRFAHIEIPVHAFGFGSKTGYSHEPGEDAFAKCVGGLLSVVVQDLRIQLGFQSDSARAEISAMYSCSGRPTLLSLGAVRLGDLYAEEERELLVEMRVPALGMGPRAHHVMTVRCLYKDPASQEIVYGREQGLTVQLHQNHSQTVRSSQTKIERLRNLFITTRAIAESRRLLDHNSNFTSAHHLLSSARALLIQSGSASAEQYVRGLEAELAELHWRRQQEQVHVEAQQQQVMQRRRGVEREMNCNMVDENGEPLTPTSAWRAAEMLAKMAMVKKSLNKVSDLHGFENARF 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04308 773 ProSiteProfiles Zinc finger RING-type profile. 126 171 IPR001841 -
Vifa2g04308 773 Gene3D von Willebrand factor, type A domain 354 518 IPR036465 -
Vifa2g04308 773 SMART ring_2 126 170 IPR001841 -
Vifa2g04308 773 SMART VWA_4 352 539 IPR002035 -
Vifa2g04308 773 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 125 768 - -
Vifa2g04308 773 CDD vWA_C3HC4_type 353 525 - -
Vifa2g04308 773 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 181 IPR013083 -
Vifa2g04308 773 SUPERFAMILY vWA-like 352 527 IPR036465 -
Vifa2g04308 773 MobiDBLite consensus disorder prediction 1 110 - -
Vifa2g04308 773 MobiDBLite consensus disorder prediction 188 236 - -
Vifa2g04308 773 Pfam von Willebrand factor type A domain 354 499 IPR002035 -
Vifa2g04308 773 Pfam RING-like zinc finger 126 155 IPR001841 -
Vifa2g04308 773 SUPERFAMILY RING/U-box 120 176 - -
Vifa2g04308 773 MobiDBLite consensus disorder prediction 14 110 - -
Vifa2g04308 773 ProSiteProfiles VWFA domain profile. 354 500 IPR002035 -
Vifa2g04308 773 MobiDBLite consensus disorder prediction 188 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04308 Vifa-Chr2 1268048920 1268051350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04308 118 273 C3H Transcription Factor Family AT3G03550 28.302 4.33e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04308 - - lja:Lj3g3v3131860.1 1000.35