Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04306 ATGGAGTTTTATGATGGAGATTTGATGGAGGAATTAATGGCTCTAAGAAGAGAAACTCCAAATCAAAATGAAGAAGAAAATCAATTCTTCTCATCATCAAGTAATAACAACATCTTGAGTTTGGAAAACTGTTTCGATCAAAACTCTTTATATTATCAACAAAACTCTTGTAGTCAACAACTCTTTCCTCAAAGTTACATCAACAATGACTACTATAGTAACACTTTCAATGAAATCTATGATTCATTACTTCAAGAATCTTCAACACCTCAGATTCTTGATTCATATTACAATAACACACTCGACACGCCGTTTGTTTCTCAAGAAGATTTTCCACTGTCCATGATCGGAGAAGGAGAAGGAGAAGAAGAAGAAGATCAATGTTTGCTTGGCGAAGAGATTAAGAATTTGGAGCTGCAAACAAAATGTAAAATGGAGGAAACACAATCACCAGAAATGCCGGTAGTTTTCAAGTCTGAAAACAGTTTGGAGAGAAAAAATCGGTCCAAGAAGCTTCAAGGACAACCATCCAAGAATCTAATGGCGGAAAGGAGACGAAGGAAGAGATTAAACGATCGCCTATCGATGCTTCGAGCAATTGTCCCTAAGATAAGCAAGATGGATAGAACGGCTATACTCGGAGATACTATTGATTACATGAAAGAACTTCTAGAGAAAATCAACAATCTACAACAAGAAATTGAACTAGATTCAAACATGTCAAGCGTTGTCAAAGATGTAAAGCCAAATGAAATCTTAATAAGAAACTCGCCAAAGTTTGAGGTGGAGAGAGGCCTAGAGACTAGGGTTGAAATTTGTTGTGCAGGGAAACCAGGGCTATTGCTATCCACAGTGAACACATTGGAAGCAGTAGGTCTTGAGATTCAACAATGTGTTATAAGTTGTTTCAATGAGTTCTCAATGCAAGCTTCTTGCTCAGAGGAATTTGAGAGAAGCACAATGCTATGTTCTGAAGATATTAAGCAAGCTTTGTTTAGAGGTGCAGGGTATGGAGGAAGATGTTTGTGA 1029 0.3722 MEFYDGDLMEELMALRRETPNQNEEENQFFSSSSNNNILSLENCFDQNSLYYQQNSCSQQLFPQSYINNDYYSNTFNEIYDSLLQESSTPQILDSYYNNTLDTPFVSQEDFPLSMIGEGEGEEEEDQCLLGEEIKNLELQTKCKMEETQSPEMPVVFKSENSLERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTAILGDTIDYMKELLEKINNLQQEIELDSNMSSVVKDVKPNEILIRNSPKFEVERGLETRVEICCAGKPGLLLSTVNTLEAVGLEIQQCVISCFNEFSMQASCSEEFERSTMLCSEDIKQALFRGAGYGGRCL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04306 342 Coils Coil 213 240 - -
Vifa2g04306 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 236 IPR036638 GO:0046983
Vifa2g04306 342 Gene3D - 182 256 IPR036638 GO:0046983
Vifa2g04306 342 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 43 336 - -
Vifa2g04306 342 MobiDBLite consensus disorder prediction 158 186 - -
Vifa2g04306 342 SMART finulus 180 229 IPR011598 GO:0046983
Vifa2g04306 342 Pfam Helix-loop-helix DNA-binding domain 180 223 IPR011598 GO:0046983
Vifa2g04306 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 223 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04306 Vifa-Chr2 1265993812 1265995264 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04306 145 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 61.386 1.75e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa2g04306 HLH 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04306 - - cam:101489960 470.7